Strain identifier
BacDive ID: 14008
Type strain: 
Species: Rhodospirillum rubrum
Strain Designation: Ha
Strain history: <- N. Pfennig <- J.H. Klemme, Ha
NCBI tax ID(s): 1085 (species)
version 8.1 (current version)
General
@ref: 2080
BacDive-ID: 14008
DSM-Number: 107
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Rhodospirillum rubrum Ha is an anaerobe, mesophilic bacterium that was isolated from brackish ditch.
NCBI tax id
- NCBI tax id: 1085
- Matching level: species
strain history
- @ref: 2080
- history: <- N. Pfennig <- J.H. Klemme, Ha
doi: 10.13145/bacdive14008.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Rhodospirillum
- species: Rhodospirillum rubrum
- full scientific name: Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Spirillum rubrum
@ref: 2080
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Rhodospirillum
species: Rhodospirillum rubrum
full scientific name: Rhodospirillum rubrum (Esmarch 1887) Molisch 1907
strain designation: Ha
type strain: no
Culture and growth conditions
culture medium
- @ref: 2080
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 2080
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 2080
- oxygen tolerance: anaerobe
compound production
- @ref: 2080
- compound: carotenoids
Isolation, sampling and environmental information
isolation
- @ref: 2080
- sample type: brackish ditch
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Brackish |
| #Environmental | #Terrestrial | #Tidal flat |
Safety information
risk assessment
- @ref: 2080
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: R.rubrum 16S rRNA gene
- accession: X87278
- length: 1477
- database: ena
- NCBI tax ID: 1085
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodospirillum rubrum DSM 107 | GCA_016583925 | contig | ncbi | 1085 |
| 66792 | Rhodospirillum rubrum strain DSM 107 | 1085.14 | wgs | patric | 1085 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 90.094 | no |
| flagellated | yes | 80.185 | no |
| gram-positive | no | 98.836 | no |
| anaerobic | yes | 79.041 | no |
| aerobic | no | 88.88 | no |
| halophile | no | 93.27 | no |
| spore-forming | no | 91.51 | no |
| thermophile | no | 98.964 | no |
| glucose-util | yes | 78.57 | no |
| glucose-ferment | no | 85.667 | no |
External links
@ref: 2080
culture collection no.: DSM 107
straininfo link
- @ref: 83178
- straininfo: 4926
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2080 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 107) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-107 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 83178 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4926.1 | StrainInfo: A central database for resolving microbial strain identifiers |