Strain identifier
BacDive ID: 140002
Type strain: 
Species: Halomonas sp.
Strain Designation: LMC2-5
Strain history: <- Z. Shao, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; LMC2-5 <- C. Dong
NCBI tax ID(s): 1486246 (species)
General
@ref: 42610
BacDive-ID: 140002
DSM-Number: 22155
keywords: 16S sequence, Bacteria, mesophilic
description: Halomonas sp. LMC2-5 is a mesophilic bacterium that was isolated from Deep-sea sediment.
NCBI tax id
- NCBI tax id: 1486246
- Matching level: species
strain history
- @ref: 42610
- history: <- Z. Shao, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; LMC2-5 <- C. Dong
doi: 10.13145/bacdive140002.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas sp.
- full scientific name: Halomonas Vreeland et al. 1980
synonyms
@ref synonym 20215 Litchfieldella 20215 Franzmannia 20215 Billgrantia 20215 Onishia 20215 Vreelandella 20215 Bisbaumannia 20215 Volcaniella 20215 Deleya
@ref: 42610
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas sp.
full scientific name: Halomonas sp.
strain designation: LMC2-5
type strain: no
Culture and growth conditions
culture medium
- @ref: 42610
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 42610
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42610
- sample type: Deep-sea sediment
- geographic location: Pacific Ocean
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_5080.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_2476;97_3024;98_3792;99_5080&stattab=map
- Last taxonomy: Halomonas zincidurans
- 16S sequence: FJ820186
- Sequence Identity:
- Total samples: 405
- soil counts: 23
- aquatic counts: 350
- animal counts: 19
- plant counts: 13
Sequence information
16S sequences
- @ref: 42610
- description: Chromohalobacter sp. LMC2-5 16S ribosomal RNA gene, partial sequence
- accession: FJ820186
- length: 1518
- database: ena
- NCBI tax ID: 649301
External links
@ref: 42610
culture collection no.: DSM 22155
straininfo link
- @ref: 96431
- straininfo: 398485
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42610 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22155 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22155) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96431 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398485.1 |