Strain identifier

BacDive ID: 139941

Type strain: Yes

Species: Francisella persica

Strain history: <- E. Weiss, Naval Medical Research Institute Bethesda, USA; FSC845; original depositor material obtained from ATCC

NCBI tax ID(s): 1086726 (strain), 954 (species)

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General

@ref: 42549

BacDive-ID: 139941

DSM-Number: 101678

keywords: genome sequence, Bacteria, mesophilic

description: Francisella persica DSM 101678 is a mesophilic bacterium that was isolated from Malpighian tubules of ticks arboreus) removed from buff-backed heron Bubulcus ibis.

NCBI tax id

NCBI tax idMatching level
1086726strain
954species

strain history

  • @ref: 42549
  • history: <- E. Weiss, Naval Medical Research Institute Bethesda, USA; FSC845; original depositor material obtained from ATCC

doi: 10.13145/bacdive139941.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Francisellaceae
  • genus: Francisella
  • species: Francisella persica
  • full scientific name: Francisella persica (Suitor and Weiss 1961) Larson et al. 2016
  • synonyms

    • @ref: 20215
    • synonym: Wolbachia persica

@ref: 42549

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Francisella

species: Francisella persica

full scientific name: Francisella persica (Suitor and Weiss 1961) Larson et al. 2016

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.555
6948099.956negative

Culture and growth conditions

culture medium

  • @ref: 42549
  • name: FRANCISELLA PERSICA MEDIUM (DSMZ Medium 1600)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1600
  • composition: Name: FRANCISELLA PERSICA MEDIUM (DSMZ Medium 1600) Composition: D-Glucose 6.25419 g/l L-Glutamic acid 1.39665 g/l L-Proline 0.837989 g/l alpha-ketoglutaric acid 0.835196 g/l DL-aspartic acid 0.835196 g/l L-Glutamine 0.29228 g/l Glutathione 0.27933 g/l Ascorbic acid 0.27933 g/l Para-aminobenzoic acid 0.027933 g/l FeSO4 x 7 H2O 0.0139665 g/l Vitamin B12 0.0139665 g/l D-Biotin 0.0027933 g/l ZnSO4 x 7 H2O 0.000558659 g/l MnSO4 x 1 H2O 0.000446927 g/l Na2SeO3 5.58659e-05 g/l Na2 MoO4 x 2 H2O 5.58659e-05 g/l CoCl2 x 6 H2O 5.58659e-05 g/l CuSO4 x 5 H2O 5.58659e-05 g/l Demineralized water Tryptose-phosphate FBS cholesterol lipid concentrate L-15 powder

culture temp

  • @ref: 42549
  • growth: positive
  • type: growth
  • temperature: 34
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

Isolation, sampling and environmental information

isolation

  • @ref: 42549
  • sample type: Malpighian tubules of ticks (Argas (Persicargas) arboreus) removed from buff-backed heron Bubulcus ibis
  • host species: Argas (Persicargas) arboreus;Bubulcus ibis
  • geographic location: Nile Barrage Park near Cairo
  • country: Egypt
  • origin.country: EGY
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Tick
#Host#Birds
#Host Body-Site#Gastrointestinal tract

Safety information

risk assessment

  • @ref: 42549
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Francisella persica ATCC VR-331 FSC845GCA_001275365completencbi1086726
66792Francisella persica ATCC VR-3311086726.6completepatric1086726

GC content

  • @ref: 42549
  • GC-content: 31.39
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.911no
flagellatedno97.549no
gram-positiveno97.687no
anaerobicno90.21no
halophileno76.083no
spore-formingno97.933no
thermophileno93.813no
glucose-utilyes61.573no
aerobicno79.107no
glucose-fermentno61.534no

External links

@ref: 42549

culture collection no.: DSM 101678, ATCC VR-331, FSC 845

straininfo link

  • @ref: 96371
  • straininfo: 396753

literature

  • topic: Phylogeny
  • Pubmed-ID: 26747442
  • title: Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae.
  • authors: Larson MA, Nalbantoglu U, Sayood K, Zentz EB, Cer RZ, Iwen PC, Francesconi SC, Bishop-Lilly KA, Mokashi VP, Sjostedt A, Hinrichs SH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000855
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Francisella/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wolbachia/classification
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42549Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101678Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101678)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96371Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396753.1