Strain identifier
BacDive ID: 139941
Type strain: 
Species: Francisella persica
Strain history: <- E. Weiss, Naval Medical Research Institute Bethesda, USA; FSC845; original depositor material obtained from ATCC
NCBI tax ID(s): 1086726 (strain), 954 (species)
version 9.1 (current version)
General
@ref: 42549
BacDive-ID: 139941
DSM-Number: 101678
keywords: genome sequence, Bacteria, Gram-negative
description: Francisella persica DSM 101678 is a Gram-negative bacterium that was isolated from Malpighian tubules of ticks arboreus) removed from buff-backed heron Bubulcus ibis.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1086726 | strain |
| 954 | species |
strain history
- @ref: 42549
- history: <- E. Weiss, Naval Medical Research Institute Bethesda, USA; FSC845; original depositor material obtained from ATCC
doi: 10.13145/bacdive139941.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Beggiatoales
- family: Francisellaceae
- genus: Francisella
- species: Francisella persica
- full scientific name: Francisella persica (Suitor and Weiss 1961) Larson et al. 2016
synonyms
- @ref: 20215
- synonym: Wolbachia persica
@ref: 42549
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Thiotrichales
family: Francisellaceae
genus: Francisella
species: Francisella persica
full scientific name: Francisella persica (Suitor and Weiss 1961) Larson et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96
Culture and growth conditions
culture medium
- @ref: 42549
- name: FRANCISELLA PERSICA MEDIUM (DSMZ Medium 1600)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1600
- composition: Name: FRANCISELLA PERSICA MEDIUM (DSMZ Medium 1600) Composition: D-Glucose 6.25419 g/l L-Glutamic acid 1.39665 g/l L-Proline 0.837989 g/l alpha-ketoglutaric acid 0.835196 g/l DL-aspartic acid 0.835196 g/l L-Glutamine 0.29228 g/l Glutathione 0.27933 g/l Ascorbic acid 0.27933 g/l Para-aminobenzoic acid 0.027933 g/l FeSO4 x 7 H2O 0.0139665 g/l Vitamin B12 0.0139665 g/l D-Biotin 0.0027933 g/l ZnSO4 x 7 H2O 0.000558659 g/l MnSO4 x 1 H2O 0.000446927 g/l Na2SeO3 5.58659e-05 g/l Na2 MoO4 x 2 H2O 5.58659e-05 g/l CoCl2 x 6 H2O 5.58659e-05 g/l CuSO4 x 5 H2O 5.58659e-05 g/l Demineralized water Tryptose-phosphate FBS cholesterol lipid concentrate L-15 powder
culture temp
- @ref: 42549
- growth: positive
- type: growth
- temperature: 34
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 92.935 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 42549
- sample type: Malpighian tubules of ticks (Argas (Persicargas) arboreus) removed from buff-backed heron Bubulcus ibis
- host species: Argas (Persicargas) arboreus;Bubulcus ibis
- geographic location: Nile Barrage Park near Cairo
- country: Egypt
- origin.country: EGY
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Tick |
| #Host | #Birds | |
| #Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 42549
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Francisella persica ATCC VR-331 FSC845 | GCA_001275365 | complete | ncbi | 1086726 |
| 66792 | Francisella persica ATCC VR-331 | 1086726.6 | complete | patric | 1086726 |
GC content
- @ref: 42549
- GC-content: 31.39
- method: sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.324 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 56.619 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.935 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.136 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.432 | no |
External links
@ref: 42549
culture collection no.: DSM 101678, ATCC VR-331, FSC 845
straininfo link
- @ref: 96371
- straininfo: 396753
literature
- topic: Phylogeny
- Pubmed-ID: 26747442
- title: Reclassification of Wolbachia persica as Francisella persica comb. nov. and emended description of the family Francisellaceae.
- authors: Larson MA, Nalbantoglu U, Sayood K, Zentz EB, Cer RZ, Iwen PC, Francesconi SC, Bishop-Lilly KA, Mokashi VP, Sjostedt A, Hinrichs SH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000855
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Francisella/*classification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wolbachia/classification
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42549 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101678 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101678) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96371 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396753.1 |