Strain identifier

BacDive ID: 139939

Type strain: No

Species: Fibrobacter intestinalis

Strain Designation: UW S2, UWS2

Strain history: <- A. Neumann; University of Wisconsin - Madison, Madison, USA; UW S2<-A. Neumann

NCBI tax ID(s): 28122 (species)

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General

@ref: 42547

BacDive-ID: 139939

DSM-Number: 104697

keywords: Bacteria

description: Fibrobacter intestinalis UW S2 is a bacterium that was isolated from Pig cecum.

NCBI tax id

  • NCBI tax id: 28122
  • Matching level: species

strain history

  • @ref: 42547
  • history: <- A. Neumann; University of Wisconsin - Madison, Madison, USA; UW S2<-A. Neumann

doi: 10.13145/bacdive139939.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fibrobacterota
  • domain: Bacteria
  • phylum: Fibrobacterota
  • class: Fibrobacteria
  • order: Fibrobacterales
  • family: Fibrobacteraceae
  • genus: Fibrobacter
  • species: Fibrobacter intestinalis
  • full scientific name: Fibrobacter intestinalis Montgomery et al. 1988

@ref: 42547

domain: Bacteria

phylum: Fibrobacteres

class: Fibrobacteria

order: Fibrobacterales

family: Fibrobacteraceae

genus: Fibrobacter

species: Fibrobacter intestinalis

full scientific name: Fibrobacter intestinalis Montgomery et al. 1988

strain designation: UW S2, UWS2

type strain: no

Culture and growth conditions

culture medium

  • @ref: 42547
  • name: MDM (MODIFIED DEHORITY MEDIUM) (DSMZ Medium 1668)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1668
  • composition: Name: MDM (modified dehority medium) (DSMZ Medium 1668) Composition: L-Cysteine HCl 1.0 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l K2HPO4 0.013608 g/l NaHCO3 0.013442 g/l NaCl 0.00935 g/l NH4Cl 0.00321 g/l MgCl2 x 2 H2O 0.001942 g/l ZnCl2 0.000546 g/l NiCl2 x 6 H2O 0.000474 g/l CoCl2 0.000208 g/l MgCl2 0.00019 g/l CaCl2 0.000178 g/l Na2WO4 x 2 H2O 0.000132 g/l Na2 MoO4 x 2 H2O 9.6e-05 g/l Na2SeO3 7e-05 g/l FeSO4 x 7 H2O 5.6e-05 g/l Distilled water

culture temp

  • @ref: 42547
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate+degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase+4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
42547--------------------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
42547------+--+/---+----+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 42547
  • sample type: Pig cecum
  • geographic location: Madison, WI
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Small intestine

Safety information

risk assessment

  • @ref: 42547
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 42547

culture collection no.: DSM 104697

straininfo link

  • @ref: 96369
  • straininfo: 402349

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42547Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104697Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104697)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
96369Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402349.1