Strain identifier
BacDive ID: 139916
Type strain: 
Species: Massilia violaceinigra
Strain Designation: B2
Strain history: <- H. Wang, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; B2 <- K. Lou
NCBI tax ID(s): 2045208 (species)
version 8.1 (current version)
General
@ref: 42524
BacDive-ID: 139916
DSM-Number: 19531
keywords: 16S sequence, Bacteria, psychrophilic
description: Massilia violaceinigra B2 is a psychrophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 2045208
- Matching level: species
strain history
- @ref: 42524
- history: <- H. Wang, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; B2 <- K. Lou
doi: 10.13145/bacdive139916.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Massilia
- species: Massilia violaceinigra
- full scientific name: Massilia violaceinigra Wang et al. 2018
synonyms
- @ref: 20215
- synonym: Mokoshia violaceinigra
@ref: 42524
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Massilia
species: Massilia violaceinigra
full scientific name: Massilia violaceinigra Wang et al. 2018
strain designation: B2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42524
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 42524
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 42524
- sample type: soil
- geographic location: Xinjiang province, Tianshan glacier
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_7427.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_429;97_540;98_5444;99_7427&stattab=map
- Last taxonomy: Massilia
- 16S sequence: EF592558
- Sequence Identity:
- Total samples: 5949
- soil counts: 2992
- aquatic counts: 1431
- animal counts: 1147
- plant counts: 379
Sequence information
16S sequences
- @ref: 42524
- description: Duganella sp. B2 16S ribosomal RNA gene, partial sequence
- accession: EF592558
- length: 1406
- database: ena
- NCBI tax ID: 445969
External links
@ref: 42524
culture collection no.: DSM 19531
straininfo link
- @ref: 96348
- straininfo: 408193
literature
- topic: Phylogeny
- Pubmed-ID: 29851375
- title: Massilia violaceinigra sp. nov., a novel purple-pigmented bacterium isolated from glacier permafrost.
- authors: Wang H, Zhang X, Wang S, Zhao B, Lou K, Xing XH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002826
- year: 2018
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/*microbiology, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, Permafrost/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42524 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19531 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19531) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96348 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408193.1 |