Strain identifier
BacDive ID: 139903
Type strain: 
Species: Aeromicrobium panacisoli
Strain history: <- ST Lee, KAIST
NCBI tax ID(s): 2708114 (species)
version 9 (current version)
General
@ref: 42511
BacDive-ID: 139903
DSM-Number: 17940
keywords: 16S sequence, Bacteria, aerobe, Gram-positive
description: Aeromicrobium panacisoli DSM 17940 is an aerobe, Gram-positive bacterium that was isolated from soil, ginseng field.
NCBI tax id
- NCBI tax id: 2708114
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42511 | <- S. T. Lee, KAIST <- W.-T. Im; Gsoil 137 |
| 67771 | <- ST Lee, KAIST |
doi: 10.13145/bacdive139903.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Aeromicrobium
- species: Aeromicrobium panacisoli
- full scientific name: Aeromicrobium panacisoli Siddiqi et al. 2019
@ref: 42511
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Aeromicrobium
species: Aeromicrobium panacisoli
full scientific name: Aeromicrobium panacisoli Siddiqi et al. 2019
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 42511 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf |
| 42511 | GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1484.pdf |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 42511 | positive | growth | 28 |
| 59561 | positive | growth | 30 |
| 67771 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 59561 | aerobe |
| 67771 | aerobe |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 42511 | soil, ginseng field | Daejeon | Republic of Korea | KOR | Asia |
| 59561 | Soil,ginseng field | Pocheon | Republic of Korea | KOR | Asia |
| 67771 | From soil of ginseng field | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Sequence information
16S sequences
- @ref: 42511
- description: Aeromicrobium ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 137
- accession: AB245395
- length: 1470
- database: nuccore
- NCBI tax ID: 363867
GC content
- @ref: 42511
- GC-content: 70.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 42511
culture collection no.: DSM 17940, CCUG 52475, KCTC 19130, Gsoil 137
straininfo link
- @ref: 96336
- straininfo: 398931
literature
- topic: Phylogeny
- Pubmed-ID: 29289978
- title: Aeromicrobium panacisoli sp. nov. Isolated from Soil of Ginseng Cultivating Field.
- authors: Siddiqi MZ, Lee SY, Choi KD, Im WT
- journal: Curr Microbiol
- DOI: 10.1007/s00284-017-1426-4
- year: 2017
- mesh: Actinomycetales/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Panax/*growth & development, Phylogeny, Republic of Korea, *Soil Microbiology
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42511 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17940 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17940) | |
| 59561 | Curators of the CCUG | https://www.ccug.se/strain?id=52475 | Culture Collection University of Gothenburg (CCUG) (CCUG 52475) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 96336 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398931.1 |