Strain identifier
BacDive ID: 139898
Type strain: 
Species: Virgibacillus sp.
Strain Designation: 2-9-3
Strain history: <- T. Naganuma, Hiroshima Univ., Grad. School of Adv. Sciences of Matter <- R. H. Vreeland; 2-9-3
NCBI tax ID(s): 1872700 (species)
version 9 (current version)
General
@ref: 42506
BacDive-ID: 139898
DSM-Number: 18395
keywords: 16S sequence, Bacteria
description: Virgibacillus sp. 2-9-3 is a bacterium that was isolated from brine inclusion of salt crystal.
NCBI tax id
- NCBI tax id: 1872700
- Matching level: species
strain history
- @ref: 42506
- history: <- T. Naganuma, Hiroshima Univ., Grad. School of Adv. Sciences of Matter <- R. H. Vreeland; 2-9-3
doi: 10.13145/bacdive139898.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Virgibacillus
- species: Virgibacillus sp.
- full scientific name: Virgibacillus Heyndrickx et al. 1998
synonyms
- @ref: 20215
- synonym: Salibacillus
@ref: 42506
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Virgibacillus
species: Virgibacillus sp.
full scientific name: Virgibacillus sp.
strain designation: 2-9-3
type strain: no
Culture and growth conditions
culture medium
- @ref: 42506
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 42506
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 42506
- sample type: brine inclusion of salt crystal
- geographic location: New Mexico
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Condition | #Saline |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_15704.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_1861;97_2610;98_11847;99_15704&stattab=map
- Last taxonomy: Virgibacillus
- 16S sequence: AF166093
- Sequence Identity:
- Total samples: 121
- soil counts: 22
- aquatic counts: 31
- animal counts: 63
- plant counts: 5
Sequence information
16S sequences
- @ref: 42506
- description: Bacillus permians 16S ribosomal RNA gene, complete sequence
- accession: AF166093
- length: 1560
- database: nuccore
- NCBI tax ID: 109971
External links
@ref: 42506
culture collection no.: DSM 18395
straininfo link
- @ref: 96332
- straininfo: 401524
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42506 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18395 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18395) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96332 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401524.1 |