Strain identifier
BacDive ID: 139852
Type strain: 
Species: Marinobacter sp.
Strain Designation: TK-36
Strain history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; TK-36 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA
NCBI tax ID(s): 1761793 (species)
version 9.1 (current version)
General
@ref: 42460
BacDive-ID: 139852
DSM-Number: 26671
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Marinobacter sp. TK-36 is a Gram-negative bacterium that was isolated from oil-contaminated surface water of Deepwater Horizon oil spill.
NCBI tax id
- NCBI tax id: 1761793
- Matching level: species
strain history
- @ref: 42460
- history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; TK-36 <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA
doi: 10.13145/bacdive139852.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacter
- species: Marinobacter sp.
- full scientific name: Marinobacter Gauthier et al. 1992
@ref: 42460
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacter
species: Marinobacter sp.
full scientific name: Marinobacter sp.
strain designation: TK-36
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.994
Culture and growth conditions
culture medium
- @ref: 42460
- name: ONR7a MEDIUM (DSMZ Medium 950)
- growth: yes
- link: https://mediadive.dsmz.de/medium/950
- composition: Name: ONR7a MEDIUM (DSMZ Medium 950; with strain-specific modifications) Composition: NaCl 22.79 g/l Agar 15.0 g/l Agarose 12.0 g/l MgCl2 x 6 H2O 11.18 g/l Sodium pyruvate 10.0 g/l Na2SO4 3.98 g/l CaCl2 x 2 H2O 1.46 g/l TAPSO 1.3 g/l KCl 0.72 g/l NH4Cl 0.27 g/l Na2HPO4 x 7 H2O 0.089 g/l NaBr 0.083 g/l NaHCO3 0.031 g/l H3BO3 0.027 g/l SrCl2 x 6 H2O 0.024 g/l NaF 0.0026 g/l FeCl2 x 4 H2O 0.002 g/l Distilled water
culture temp
- @ref: 42460
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 42460
- sample type: oil-contaminated surface water of Deepwater Horizon oil spill
- geographic location: Gulf of Mexico
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | #Oil (Fuel) |
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_2437.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_1317;97_1564;98_1903;99_2437&stattab=map
- Last taxonomy: Marinobacter
- 16S sequence: KC161582
- Sequence Identity:
- Total samples: 3438
- soil counts: 149
- aquatic counts: 3127
- animal counts: 133
- plant counts: 29
Sequence information
16S sequences
- @ref: 42460
- description: Marinobacter sp. TK-36 16S ribosomal RNA gene, partial sequence
- accession: KC161582
- length: 1366
- database: nuccore
- NCBI tax ID: 1761793
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marinobacter sp. DSM 26671 | GCA_900112835 | scaffold | ncbi | 1761793 |
| 66792 | Marinobacter sp. DSM 26671 | 1761793.3 | wgs | patric | 1761793 |
| 66792 | Marinobacter sp. DSM 26671 | 2619618958 | draft | img | 1761793 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.994 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.422 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.054 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.715 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 88.079 | no |
External links
@ref: 42460
culture collection no.: DSM 26671
straininfo link
- @ref: 96293
- straininfo: 408098
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42460 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26671 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26671) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96293 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID408098.1 |