Strain identifier
BacDive ID: 139782
Type strain: 
Species: Streptomyces flavovirens
Strain Designation: I. A. F. 45 CD
Strain history: <- D. Kluepfel, I. A. F. 45 CD
NCBI tax ID(s): 52258 (species)
version 8.1 (current version)
General
@ref: 9937
BacDive-ID: 139782
DSM-Number: 40990
keywords: genome sequence, Bacteria, spore-forming, mesophilic
description: Streptomyces flavovirens I. A. F. 45 CD is a spore-forming, mesophilic bacterium that was isolated from fully composted sheep manure.
NCBI tax id
- NCBI tax id: 52258
- Matching level: species
strain history
- @ref: 9937
- history: <- D. Kluepfel, I. A. F. 45 CD
doi: 10.13145/bacdive139782.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces flavovirens
- full scientific name: Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)
synonyms
@ref synonym 20215 Actinomyces flavogriseus 20215 Actinomyces flavovirens 20215 Streptomyces nigrifaciens 20215 Streptomyces flavogriseus
@ref: 9937
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces flavovirens
full scientific name: Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 emend. Lanoot et al. 2005
strain designation: I. A. F. 45 CD
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.078 | |
| 69480 | 100 | positive |
multimedia
- @ref: 9937
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40990.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9937 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 9937 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf |
culture temp
- @ref: 9937
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 9937
- sample type: fully composted sheep manure
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Host | #Mammals | #Caprinae (Sheep/Goat) |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Safety information
risk assessment
- @ref: 9937
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces flavogriseus ATCC 33331 | 591167.6 | complete | patric | 591167 |
| 66792 | Streptomyces pratensis ATCC 33331 | 591167.36 | plasmid | patric | 591167 |
| 66792 | Streptomyces pratensis ATCC 33331 | 591167.35 | plasmid | patric | 591167 |
| 66792 | Streptomyces flavogriseus IAF 45 CD, ATCC 33331 | 2630968572 | complete | img | 591167 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| gram-positive | yes | 88.626 | no |
| anaerobic | no | 99.139 | no |
| halophile | no | 93.812 | no |
| spore-forming | yes | 95.128 | no |
| glucose-util | yes | 90.701 | no |
| thermophile | no | 98.889 | yes |
| flagellated | no | 97.871 | no |
| aerobic | yes | 93.901 | no |
| motile | no | 94.066 | no |
| glucose-ferment | no | 87.949 | no |
External links
@ref: 9937
culture collection no.: DSM 40990, ATCC 33331
straininfo link
- @ref: 96225
- straininfo: 40448
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 22200863 | Comparative analysis of a cryptic thienamycin-like gene cluster identified in Streptomyces flavogriseus by genome mining. | Blanco G | Arch Microbiol | 10.1007/s00203-011-0781-y | 2011 | Anti-Bacterial Agents/biosynthesis, Base Sequence, Computational Biology, Data Mining, *Genome, Bacterial, Molecular Structure, *Multigene Family, Sequence Analysis, DNA, Streptomyces/*genetics/metabolism, Thienamycins/*biosynthesis | Transcriptome |
| Metabolism | 23763305 | Proteomics guided discovery of flavopeptins: anti-proliferative aldehydes synthesized by a reductase domain-containing non-ribosomal peptide synthetase. | Chen Y, McClure RA, Zheng Y, Thomson RJ, Kelleher NL | J Am Chem Soc | 10.1021/ja4031193 | 2013 | Aldehydes/chemistry/metabolism/*pharmacology, Antineoplastic Agents/chemistry/metabolism/*pharmacology, Calpain/antagonists & inhibitors/metabolism, Cell Line, Tumor, Cell Proliferation/drug effects, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Humans, Molecular Conformation, Oligopeptides/biosynthesis/chemistry/*pharmacology, Oxidoreductases/chemistry/*metabolism, Papain/antagonists & inhibitors/metabolism, Peptide Synthases/chemistry/*metabolism, Proteasome Inhibitors/chemistry/metabolism/*pharmacology, *Proteomics, Structure-Activity Relationship | Pathogenicity |
| Phylogeny | 23769815 | Classification of Streptomyces phylogroup pratensis (Doroghazi and Buckley, 2010) based on genetic and phenotypic evidence, and proposal of Streptomyces pratensis sp. nov. | Rong X, Doroghazi JR, Cheng K, Zhang L, Buckley DH, Huang Y | Syst Appl Microbiol | 10.1016/j.syapm.2013.03.010 | 2013 | Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Environmental Microbiology, Genes, Essential, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification/physiology | Genetics |
| Metabolism | 23974366 | Expression of the endogenous and heterologous clavulanic acid cluster in Streptomyces flavogriseus: why a silent cluster is sleeping. | Alvarez-Alvarez R, Martinez-Burgo Y, Perez-Redondo R, Brana AF, Martin JF, Liras P | Appl Microbiol Biotechnol | 10.1007/s00253-013-5148-7 | 2013 | Biosynthetic Pathways/*genetics, Clavulanic Acid/*metabolism, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Multigene Family, Real-Time Polymerase Chain Reaction, Reverse Transcriptase Polymerase Chain Reaction, Streptomyces/*genetics/*metabolism | |
| Metabolism | 24975573 | Heterologous expression of Streptomyces clavuligerus ATCC 27064 cephamycin C gene cluster. | Martinez-Burgo Y, Alvarez-Alvarez R, Perez-Redondo R, Liras P | J Biotechnol | 10.1016/j.jbiotec.2014.06.002 | 2014 | Anti-Bacterial Agents/*metabolism/pharmacology, Bacteria/drug effects, Cephamycins/*metabolism/pharmacology, Cloning, Molecular, DNA, Recombinant, Gene Transfer Techniques, Microbial Sensitivity Tests, Multigene Family/*genetics, Streptomyces/*genetics/*metabolism | Enzymology |
| Phylogeny | 25399205 | Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin. | Doroghazi JR, Buckley DH | BMC Genomics | 10.1186/1471-2164-15-970 | 2014 | Base Sequence, Biosynthetic Pathways/genetics, Conserved Sequence/*genetics, DNA Transposable Elements/genetics, Gene Ontology, *Genes, Bacterial, Genetic Linkage, *Genome, Bacterial, *Geography, Multigene Family, Phylogeny, Polymorphism, Single Nucleotide/genetics, *Recombination, Genetic, Species Specificity, Streptomyces/*genetics, beta-Lactamase Inhibitors | Genetics |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9937 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40990) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-40990 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 96225 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID40448.1 | StrainInfo: A central database for resolving microbial strain identifiers |