Strain identifier
BacDive ID: 139781
Type strain: 
Species: Streptococcus timonensis
Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2915 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière
NCBI tax ID(s): 1852387 (species)
General
@ref: 42390
BacDive-ID: 139781
DSM-Number: 103349
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Streptococcus timonensis DSM 103349 is a mesophilic bacterium that was isolated from Duodenum sample from patient.
NCBI tax id
- NCBI tax id: 1852387
- Matching level: species
strain history
- @ref: 42390
- history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2915 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière
doi: 10.13145/bacdive139781.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus timonensis
- full scientific name: Streptococcus timonensis Ricaboni et al. 2017
@ref: 42390
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus timonensis
full scientific name: Streptococcus timonensis Ricaboni et al. 2017
type strain: no
Culture and growth conditions
culture medium
- @ref: 42390
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
- @ref: 42390
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42390
- sample type: Duodenum sample from patient
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Gastrointestinal tract | #Small intestine |
| #Infection | #Patient | #Specimen |
taxonmaps
- @ref: 69479
- File name: preview.99_1663.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_4;97_4;98_4;99_1663&stattab=map
- Last taxonomy: Streptococcus
- 16S sequence: LT576411
- Sequence Identity:
- Total samples: 18
- animal counts: 17
- plant counts: 1
Sequence information
16S sequences
- @ref: 42390
- description: Streptococcus sp. Marseille-P2915 partial 16S rRNA gene, strain Marseille-P2915
- accession: LT576411
- length: 1509
- database: ena
- NCBI tax ID: 1852387
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus timonensis Marseille-P2915 | GCA_900095845 | contig | ncbi | 1852387 |
| 66792 | Streptococcus timonensis Marseille-P2915 | 2802429214 | draft | img | 1852387 |
External links
@ref: 42390
culture collection no.: DSM 103349, CSUR P2915, Marseille-P2915
literature
- topic: Phylogeny
- Pubmed-ID: 28050252
- title: Noncontiguous finished genome sequence and description of Streptococcus timonensis sp. nov. isolated from the human stomach.
- authors: Ricaboni D, Mailhe M, Lagier JC, Michelle C, Armstrong N, Bittar F, Vitton V, Benezech A, Raoult D, Million M
- journal: New Microbes New Infect
- DOI: 10.1016/j.nmni.2016.11.013
- year: 2016
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42390 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103349 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103349) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |