Strain identifier
BacDive ID: 139771
Type strain: 
Species: Pseudomonas sp.
Strain Designation: Isolate C
Strain history: <- J. García Hidalgo; Lund University, Lund, SWEDEN; Isolate C
NCBI tax ID(s): 306 (species)
General
@ref: 42380
BacDive-ID: 139771
DSM-Number: 104485
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas sp. Isolate C is a mesophilic bacterium that was isolated from Mature vegetable compost from Sysav waste company.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 42380
- history: <- J. García Hidalgo; Lund University, Lund, SWEDEN; Isolate C
doi: 10.13145/bacdive139771.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 42380
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Burkholderiales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
strain designation: Isolate C
type strain: no
Morphology
multimedia
- @ref: 42380
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104485.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 42380
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 42380
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42380
- sample type: Mature vegetable compost from Sysav waste company
- geographic location: Malmö (N 55° 38' 11.5", E 13° 02' 16.2")
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Composting |
| #Host | #Plants | #Decomposing plant |
taxonmaps
- @ref: 69479
- File name: preview.99_239.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: LT671913
- Sequence Identity:
- Total samples: 2133
- soil counts: 368
- aquatic counts: 543
- animal counts: 799
- plant counts: 423
Sequence information
16S sequences
- @ref: 42380
- description: Pseudomonas plecoglossicida partial 16S rRNA gene, isolate C
- accession: LT671913
- length: 1410
- database: ena
- NCBI tax ID: 70775
External links
@ref: 42380
culture collection no.: DSM 104485
straininfo link
- @ref: 96216
- straininfo: 401364
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42380 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104485 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104485) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96216 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401364.1 |