Strain identifier

BacDive ID: 139679

Type strain: No

Species: Vibrio vulnificus

Strain Designation: YJ016

Strain history: CIP <- 2008, D. MAZEL, Inst. Pasteur, Paris, France: strain YJ016

NCBI tax ID(s): 672 (species)

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General

@ref: 42289

BacDive-ID: 139679

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio vulnificus YJ016 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 672
  • Matching level: species

strain history

@refhistory
422892008, D. MAZEL, Inst. Pasteur, Paris, France: strain YJ016
42289CIP <- 2008, D. MAZEL, Inst. Pasteur, Paris, France: strain YJ016

doi: 10.13145/bacdive139679.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio vulnificus
  • full scientific name: Vibrio vulnificus (Reichelt et al. 1979) Farmer 1980

  • synonyms

    • @ref: 20215
    • synonym: Beneckea vulnifica

@ref: 42289

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio vulnificus

strain designation: YJ016

type strain: no

Morphology

cell morphology

  • @ref: 42289
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42289Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
42289CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

  • @ref: 42289
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 42289
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4228917632nitrate+reduction
4228916301nitrite-reduction

metabolite production

  • @ref: 42289
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
42289oxidase+
42289catalase+1.11.1.6
42289urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42289-+++-++---++-+---+--

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountryorigin.countrycontinent
42289Gulf of Mexico
42289Gulf of MexicoSeawater, sediments, plankton and shellfishMexicoMEXNorth America

Safety information

risk assessment

  • @ref: 42289
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 42289

culture collection no.: CIP 109783

straininfo link

  • @ref: 96135
  • straininfo: 371509

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42289Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109783Collection of Institut Pasteur (CIP 109783)
68382Automatically annotated from API zym
96135Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID371509.1