Strain identifier

BacDive ID: 139659

Type strain: Yes

Species: Flavobacterium cauense

Strain Designation: R2A-7

Strain history: CIP <- 2012, NBRC <- J.H. Qu, China Agric. Univ., China: strain R2A-7

NCBI tax ID(s): 1341154 (strain), 510946 (species)

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General

@ref: 42249

BacDive-ID: 139659

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Flavobacterium cauense R2A-7 is a mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

NCBI tax idMatching level
510946species
1341154strain

strain history

  • @ref: 42249
  • history: CIP <- 2012, NBRC <- J.H. Qu, China Agric. Univ., China: strain R2A-7

doi: 10.13145/bacdive139659.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium cauense
  • full scientific name: Flavobacterium cauense Qu et al. 2009

@ref: 42249

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium cauense

strain designation: R2A-7

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.998
42249negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42249MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromatiyesDistilled water make up to (1000.000 ml);R2A agar (18.200 g)
42249CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566

culture temp

  • @ref: 42249
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4224917632nitrate-reduction
4224916301nitrite-reduction

metabolite production

  • @ref: 42249
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
42249oxidase-
42249catalase+1.11.1.6
42249urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42249-+++-++++-+------+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
42249Taihu Lake, JiangsuChinaCHNAsia
42249Taihu Lake, JiangsuChinaCHNAsiaEnvironment, Sediment

Safety information

risk assessment

  • @ref: 42249
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium cauense R2A-7 CGMCC 1.7270GCA_007830385scaffoldncbi1341154
66792Flavobacterium cauense R2A-7 strain CGMCC 1.72701341154.11wgspatric1341154
66792Flavobacterium cauense CGMCC 1.72702596583571draftimg1341154

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno90.277no
flagellatedno96.302no
gram-positiveno98.735no
anaerobicno99.215no
aerobicyes91.793no
halophileno97.026no
spore-formingno95.636no
thermophileno98.727no
glucose-utilyes76.199no
glucose-fermentno94.264no

External links

@ref: 42249

culture collection no.: CIP 110387, NBRC 104929, CGMCC 1.7270

straininfo link

  • @ref: 96119
  • straininfo: 363756

literature

  • topic: Phylogeny
  • Pubmed-ID: 19625416
  • title: Flavobacterium cauense sp. nov., isolated from sediment of a eutrophic lake.
  • authors: Qu JH, Yuan HL, Li HF, Deng CP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.009688-0
  • year: 2009
  • mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Eutrophication, Fatty Acids/chemistry/metabolism, Flavobacterium/classification/genetics/*isolation & purification/metabolism, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42249Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110387Collection of Institut Pasteur (CIP 110387)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96119Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID363756.1