Strain identifier

BacDive ID: 139658

Type strain: Yes

Species: Aequorivita antarctica

Strain history: CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 640

NCBI tax ID(s): 153266 (species)

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General

@ref: 42244

BacDive-ID: 139658

DSM-Number: 14231

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, psychrophilic, Gram-negative

description: Aequorivita antarctica CIP 107457 is an obligate aerobe, psychrophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 153266
  • Matching level: species

strain history

@refhistory
422442002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 640
42244CIP <- 2002, J. Bowman, Tasmania Univ., Tasmania, Australia: strain ACAM 640

doi: 10.13145/bacdive139658.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Aequorivita
  • species: Aequorivita antarctica
  • full scientific name: Aequorivita antarctica Bowman and Nichols 2002

@ref: 42244

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Aequorivita

species: Aequorivita antarctica

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.994
42244negativerod-shapedno

pigmentation

  • @ref: 42244
  • production: no
  • name: Flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42244Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
42244CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
42244positivegrowth20psychrophilic
42244positivegrowth15-30
42244nogrowth5psychrophilic
42244nogrowth37mesophilic
42244nogrowth41thermophilic
42244nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 42244
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.991

halophily

@refsaltgrowthtested relationconcentration
42244NaClpositivegrowth2-8 %
42244NaClnogrowth0 %
42244NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
422444853esculin-hydrolysis
42244606565hippurate-hydrolysis
4224417632nitrate-reduction
4224416301nitrite-reduction
4224415792malonate-assimilation
4224417632nitrate-respiration

metabolite production

  • @ref: 42244
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4224415688acetoin-
4224417234glucose-

enzymes

@refvalueactivityec
42244oxidase-
42244beta-galactosidase-3.2.1.23
42244alcohol dehydrogenase-1.1.1.1
42244gelatinase+
42244amylase-
42244caseinase+3.4.21.50
42244catalase+1.11.1.6
42244tween esterase+
42244gamma-glutamyltransferase-2.3.2.2
42244lecithinase-
42244lipase-
42244lysine decarboxylase-4.1.1.18
42244ornithine decarboxylase-4.1.1.17
42244phenylalanine ammonia-lyase-4.3.1.24
42244tryptophan deaminase-
42244urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42244-+++-++---++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
42244--------------------------------------------------------------+--+--------------------+------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
42244Prydz BayAntarcticaATAAntarctica
42244Prydz bayAntarcticaATAAntarcticaEnvironment, Seawater, under ice2000

taxonmaps

  • @ref: 69479
  • File name: preview.99_22011.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_74;96_182;97_13478;98_16601;99_22011&stattab=map
  • Last taxonomy: Aequorivita antarctica
  • 16S sequence: AY027802
  • Sequence Identity:
  • Total samples: 142
  • soil counts: 35
  • aquatic counts: 73
  • animal counts: 33
  • plant counts: 1

Safety information

risk assessment

  • @ref: 42244
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 42244
  • description: Aequorivita ferruginea SW49T 16S ribosomal RNA gene, partial sequence
  • accession: AY027802
  • length: 1422
  • database: ena
  • NCBI tax ID: 153266

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aequorivita antarctica CIP107457TGCA_900489835contigncbi153266
66792Aequorivita antarctica strain type strain: CIP107457 strain CIP107457T153266.3wgspatric153266
66792Aequorivita antarctica CIP 1074572835100215draftimg153266

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno89.375no
gram-positiveno98.552no
anaerobicno99.239no
aerobicyes89.465no
halophileno52.951no
spore-formingno95.679no
glucose-utilyes70.361no
flagellatedno95.054no
thermophileno99.266yes
glucose-fermentno90.42no

External links

@ref: 42244

culture collection no.: CIP 107457, DSM 14231, LMG 21431, ACAM 640

straininfo link

  • @ref: 96118
  • straininfo: 86437

literature

  • topic: Phylogeny
  • Pubmed-ID: 12361255
  • title: Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats.
  • authors: Bowman JP, Nichols DS
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-52-5-1533
  • year: 2002
  • mesh: Antarctic Regions, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Gram-Negative Aerobic Rods and Cocci/chemistry/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Seawater/microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42244Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107457Collection of Institut Pasteur (CIP 107457)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96118Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID86437.1