Strain identifier

BacDive ID: 139620

Type strain: No

Species: Cutibacterium avidum

Strain history: CIP <- 1983, Lab. Ident. Inst. Pasteur, Paris, France: strain 578-83, Actinomyces sp., Propionibacterium avidum <- Saint Louis Hosp., Paris, France

NCBI tax ID(s): 33010 (species)

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General

@ref: 42186

BacDive-ID: 139620

keywords: Bacteria, facultative anaerobe, Gram-positive, rod-shaped

description: Cutibacterium avidum CIP 100358 is a facultative anaerobe, Gram-positive, rod-shaped bacterium of the family Propionibacteriaceae.

NCBI tax id

  • NCBI tax id: 33010
  • Matching level: species

strain history

  • @ref: 42186
  • history: CIP <- 1983, Lab. Ident. Inst. Pasteur, Paris, France: strain 578-83, Actinomyces sp., Propionibacterium avidum <- Saint Louis Hosp., Paris, France

doi: 10.13145/bacdive139620.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Propionibacteriaceae
  • genus: Cutibacterium
  • species: Cutibacterium avidum
  • full scientific name: Cutibacterium avidum (Eggerth 1935) Scholz and Kilian 2016

  • synonyms

    @refsynonym
    20215Bacteroides avidus
    20215Propionibacterium avidum

@ref: 42186

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Propionibacteriales

family: Propionibacteriaceae

genus: Cutibacterium

species: Cutibacterium avidum

type strain: no

Morphology

cell morphology

  • @ref: 42186
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 42186
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42186MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
42186CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
42186positivegrowth37
42186positivegrowth25-41
42186nogrowth10
42186nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 42186
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
42186NaClpositivegrowth0-6 %
42186NaClnogrowth8 %
42186NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol+builds acid from17113
68371glycerol+builds acid from17754
42186citrate-carbon source16947
42186esculin+hydrolysis4853
42186hippurate-hydrolysis606565
42186nitrate-reduction17632
42186nitrite-reduction16301
42186nitrate+respiration17632

antibiotic resistance

  • @ref: 42186
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 42186
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4218615688acetoin-
4218617234glucose+

enzymes

@refvalueactivityec
42186oxidase-
42186beta-galactosidase+3.2.1.23
42186alcohol dehydrogenase+1.1.1.1
42186gelatinase+
42186amylase-
42186DNase-
42186caseinase+3.4.21.50
42186catalase+1.11.1.6
42186tween esterase-
42186gamma-glutamyltransferase-2.3.2.2
42186lecithinase-
42186lipase-
42186lysine decarboxylase-4.1.1.18
42186ornithine decarboxylase-4.1.1.17
42186phenylalanine ammonia-lyase-4.3.1.24
42186protease-
42186tryptophan deaminase-
42186urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42186-+++++----++-+-++++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
42186++-++--+-++++--------+--+/-+/--+--++-+-----+----+/-+/-+/---

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
42186ParisFranceFRAEurope
42186ParisFranceFRAEuropeHuman, Pus1983

Safety information

risk assessment

  • @ref: 42186
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 42186

culture collection no.: CIP 100358

straininfo link

  • @ref: 96085
  • straininfo: 67179

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42186Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20100358Collection of Institut Pasteur (CIP 100358)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
96085Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67179.1