Strain identifier
BacDive ID: 139611
Type strain: 
Species: Elizabethkingia miricola
Strain history: CIP <- 1982, Inst. Pasteur, Paris, France: strain 636-82, Elizabethkingia meningoseptica <- 1982, Roanne Hosp., Roanne, France, Flavobacterium meningosepticum
NCBI tax ID(s): 172045 (species)
General
@ref: 42148
BacDive-ID: 139611
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, rod-shaped
description: Elizabethkingia miricola CIP 111047 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Weeksellaceae.
NCBI tax id
- NCBI tax id: 172045
- Matching level: species
strain history
- @ref: 42148
- history: CIP <- 1982, Inst. Pasteur, Paris, France: strain 636-82, Elizabethkingia meningoseptica <- 1982, Roanne Hosp., Roanne, France, Flavobacterium meningosepticum
doi: 10.13145/bacdive139611.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Elizabethkingia
- species: Elizabethkingia miricola
- full scientific name: Elizabethkingia miricola (Li et al. 2004) Kim et al. 2005
synonyms
- @ref: 20215
- synonym: Chryseobacterium miricola
@ref: 42148
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Elizabethkingia
species: Elizabethkingia miricola
type strain: no
Morphology
cell morphology
- @ref: 42148
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 42148 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 42148 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 42148
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 42148 | Roanne | France | FRA | Europe | ||
| 42148 | Roanne | France | FRA | Europe | Human, Blood | 1982-08-30 |
Safety information
risk assessment
- @ref: 42148
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Elizabethkingia miricola strain Illumina sequencing of Elizabethkingia miricola CIP111047 | 172045.53 | wgs | patric | 172045 |
| 66792 | Elizabethkingia miricola Illumina sequencing of Elizabethkingia miricola CIP111047 | GCA_900157015 | scaffold | ncbi | 172045 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.676 | no |
| flagellated | no | 94.7 | no |
| gram-positive | no | 97.745 | no |
| anaerobic | no | 99.704 | no |
| aerobic | yes | 89.632 | no |
| halophile | no | 95.727 | no |
| spore-forming | no | 94.357 | no |
| thermophile | no | 99.605 | yes |
| glucose-util | yes | 86.259 | no |
| glucose-ferment | no | 91.671 | no |
External links
@ref: 42148
culture collection no.: CIP 111047
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42148 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111047 | Collection of Institut Pasteur (CIP 111047) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |