Strain identifier
BacDive ID: 13961
Type strain: 
Species: Roseospira navarrensis
Strain Designation: SE3104
Strain history: <- R. Guyoneaud, IBEAS; SE3104 <- R. Matheron. The 16S rRNA gene sequence of the strain held in the DSMZ corresponds to the accession no. LN681404 and is not identical with the original sequence deposited under the accession no. AJ298880
NCBI tax ID(s): 140058 (species)
version 8.1 (current version)
General
@ref: 5716
BacDive-ID: 13961
DSM-Number: 15114
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Roseospira navarrensis SE3104 is a Gram-negative bacterium that was isolated from sulfur springs.
NCBI tax id
- NCBI tax id: 140058
- Matching level: species
strain history
- @ref: 5716
- history: <- R. Guyoneaud, IBEAS; SE3104 <- R. Matheron. The 16S rRNA gene sequence of the strain held in the DSMZ corresponds to the accession no. LN681404 and is not identical with the original sequence deposited under the accession no. AJ298880
doi: 10.13145/bacdive13961.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Roseospira
- species: Roseospira navarrensis
- full scientific name: Roseospira navarrensis Guyoneaud et al. 2003
synonyms
- @ref: 20215
- synonym: Rhodospira navarrensis
@ref: 5716
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Roseospira
species: Roseospira navarrensis
full scientific name: Roseospira navarrensis Guyoneaud et al. 2003
strain designation: SE3104
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.966
Isolation, sampling and environmental information
isolation
- @ref: 5716
- sample type: sulfur springs
- geographic location: Pyrenees
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Spring |
| #Condition | #Sulfuric |
Safety information
risk assessment
- @ref: 5716
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 5716 | Roseospira navarrensis partial 16S rRNA gene, strain DSM 15114T, isolate SE3104 | LN681404 | 1461 | ena | 140058 |
| 5716 | Roseospira navarrense partial 16S rRNA gene, strain navarrense | AJ298880 | 1282 | ena | 140058 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Roseospira navarrensis DSM 15114 | GCA_009601025 | contig | ncbi | 140058 |
| 66792 | Roseospira navarrensis strain DSM 15114 | 140058.4 | wgs | patric | 140058 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 86 | no |
| motile | yes | 86.386 | no |
| gram-positive | no | 98.917 | no |
| anaerobic | yes | 62.073 | no |
| halophile | no | 61.117 | no |
| spore-forming | no | 93.52 | no |
| glucose-util | yes | 72.447 | no |
| thermophile | no | 94.06 | no |
| aerobic | no | 92.19 | no |
| flagellated | yes | 57.653 | no |
| glucose-ferment | no | 87.832 | no |
External links
@ref: 5716
culture collection no.: DSM 15114
straininfo link
- @ref: 83133
- straininfo: 128016
literature
- topic: Phylogeny
- Pubmed-ID: 12375098
- title: Characterization of three spiral-shaped purple nonsulfur bacteria isolated from coastal lagoon sediments, saline sulfur springs, and microbial mats: emended description of the genus Roseospira and description of Roseospira marina sp. nov., Roseospira navarrensis sp. nov., and Roseospira thiosulfatophila sp. nov.
- authors: Guyoneaud R, Moune S, Eatock C, Bothorel V, Hirschler-Rea A, Willison J, Duran R, Liesack W, Herbert R, Matheron R, Caumette P
- journal: Arch Microbiol
- DOI: 10.1007/s00203-002-0454-y
- year: 2002
- mesh: Base Composition, Geologic Sediments/*microbiology, Microscopy, Phase-Contrast, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodospirillum/*classification/*genetics, Sequence Analysis, DNA, Sulfur/metabolism, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5716 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15114) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15114 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 83133 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID128016.1 | StrainInfo: A central database for resolving microbial strain identifiers |