Strain identifier

BacDive ID: 139589

Type strain: No

Species: Pseudomonas plecoglossicida

Strain history: CIP <- 2000, H. Wakabayashi, Tokyo Univ., Tokyo, Japan: strain FPC 337 <- K. Sawada

NCBI tax ID(s): 70775 (species)

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General

@ref: 42083

BacDive-ID: 139589

keywords: Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped

description: Pseudomonas plecoglossicida CIP 106495 is an obligate aerobe, Gram-negative, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 70775
  • Matching level: species

strain history

  • @ref: 42083
  • history: CIP <- 2000, H. Wakabayashi, Tokyo Univ., Tokyo, Japan: strain FPC 337 <- K. Sawada

doi: 10.13145/bacdive139589.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas plecoglossicida
  • full scientific name: Pseudomonas plecoglossicida Nishimori et al. 2000

@ref: 42083

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas plecoglossicida

type strain: no

Morphology

cell morphology

  • @ref: 42083
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 42083
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42083MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
42083CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
42083positivegrowth30
42083positivegrowth5-37
42083nogrowth41

Physiology and metabolism

oxygen tolerance

  • @ref: 42083
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
42083NaClpositivegrowth0-4 %
42083NaClnogrowth6 %
42083NaClnogrowth8 %
42083NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4208316947citrate+carbon source
420834853esculin-hydrolysis
4208317632nitrate+reduction
4208316301nitrite-reduction
4208317632nitrate-respiration

antibiotic resistance

  • @ref: 42083
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 42083
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
42083oxidase+
42083beta-galactosidase-3.2.1.23
42083alcohol dehydrogenase+1.1.1.1
42083gelatinase-
42083amylase-
42083DNase-
42083caseinase-3.4.21.50
42083catalase+1.11.1.6
42083tween esterase-
42083lecithinase-
42083lipase-
42083lysine decarboxylase-4.1.1.18
42083ornithine decarboxylase-4.1.1.17
42083protease-
42083tryptophan deaminase-
42083urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42083-+++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
42083++-----------------------------+------------+---+++--+------+++++--+--++++++++-+++-++--++++++++-+++

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
42083Tokushina PrefectureJapanJPNAsia
42083TokushimaJapanJPNAsiaAnimal, Ayu, Plecoglossus altivelis1995

Safety information

risk assessment

  • @ref: 42083
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 42083

culture collection no.: CIP 106495, FPC 337

straininfo link

  • @ref: 96062
  • straininfo: 69816

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42083Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106495Collection of Institut Pasteur (CIP 106495)
68382Automatically annotated from API zym
96062Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69816.1