Strain identifier
BacDive ID: 13956
Type strain: 
Species: Magnetospirillum molischianum
Strain Designation: S
Strain history: <- DSM <- KE Eimhjellen, NTHC, 131 <- ATCC <- CB van Niel, S <- G Giesberger
NCBI tax ID(s): 1150626 (strain), 1083 (species)
version 8.1 (current version)
General
@ref: 2105
BacDive-ID: 13956
DSM-Number: 120
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, spiral-shaped
description: Magnetospirillum molischianum S is an anaerobe, mesophilic, spiral-shaped bacterium that was isolated from mud from a ditch.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1150626 | strain |
| 1083 | species |
strain history
| @ref | history |
|---|---|
| 2105 | <- K.E. Eimhjellen, NTHC, 131 <- ATCC <- C.B. van Niel, S <- G. Giesberger |
| 67771 | <- DSM <- KE Eimhjellen, NTHC, 131 <- ATCC <- CB van Niel, S <- G Giesberger |
doi: 10.13145/bacdive13956.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum molischianum
- full scientific name: Magnetospirillum molischianum (Giesberger 1947) Hördt et al. 2020
synonyms
@ref synonym 20215 Rhodospirillum molischianum 20215 Phaeospirillum molischianum
@ref: 2105
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum molischianum
full scientific name: Magnetospirillum molischianum (Giesberger 1947) Hördt et al. 2020
strain designation: S
type strain: yes
Morphology
cell morphology
| @ref | cell shape | gram stain | confidence |
|---|---|---|---|
| 67771 | spiral-shaped | ||
| 67771 | negative | ||
| 69480 | negative | 100 |
Culture and growth conditions
culture medium
- @ref: 2105
- name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27)
- growth: yes
- link: https://mediadive.dsmz.de/medium/27
- composition: Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2105 | positive | growth | 25 | mesophilic |
| 67771 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 2105 | anaerobe | |
| 67771 | anaerobe | |
| 69480 | anaerobe | 96.51 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.971 |
observation
- @ref: 67771
- observation: quinones: Q-9, MK-9
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 2105 | mud from a ditch |
| 67771 | From mud from a ditch |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_5865.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_2811;97_3451;98_4361;99_5865&stattab=map
- Last taxonomy: Magnetospirillum
- 16S sequence: FR733695
- Sequence Identity:
- Total samples: 534
- soil counts: 89
- aquatic counts: 370
- animal counts: 29
- plant counts: 46
Safety information
risk assessment
- @ref: 2105
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodospirillum molischianum 16S ribosomal RNA | M59067 | 1485 | ena | 1083 |
| 20218 | Phaeospirillum molischianum partial 16S rRNA gene, type strain DSM120T | FR733695 | 1473 | ena | 1150626 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Magnetospirillum molischianum DSM 120 | GCA_000294655 | contig | ncbi | 1150626 |
| 66792 | Phaeospirillum molischianum DSM 120 | 1150626.3 | wgs | patric | 1150626 |
| 66792 | Magnetospirillum molischianum DSM 120 | 2531839420 | draft | img | 1150626 |
GC content
- @ref: 2105
- GC-content: 61.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.636 | no |
| gram-positive | no | 99.361 | no |
| anaerobic | yes | 97.962 | yes |
| aerobic | no | 98.038 | no |
| halophile | no | 97.064 | no |
| spore-forming | no | 87.334 | no |
| flagellated | yes | 80.018 | no |
| thermophile | no | 97.695 | yes |
| glucose-util | yes | 52.523 | no |
| glucose-ferment | no | 85.645 | no |
External links
@ref: 2105
culture collection no.: DSM 120, ATCC 14031, KCTC 15609, NTHC 131, LMG 4354
straininfo link
- @ref: 83128
- straininfo: 4919
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 7669805 | Electron paramagnetic resonance studies of ferric cytochrome c' from photosynthetic bacteria. | Fujii S, Yoshimura T, Kamada H, Yamaguchi K, Suzuki S, Shidara S, Takakuwa S | Biochim Biophys Acta | 10.1016/0167-4838(95)00092-9 | 1995 | Chromatium/*enzymology, Cytochrome-c Peroxidase/chemistry, Electron Spin Resonance Spectroscopy, Hydrogen-Ion Concentration, Peroxidases/*chemistry/isolation & purification, Rhodobacter capsulatus/*enzymology, Rhodopseudomonas/*enzymology, Rhodospirillum/*enzymology | Phylogeny |
| Metabolism | 20212143 | Antenna mixing in photosynthetic membranes from Phaeospirillum molischianum. | Mascle-Allemand C, Duquesne K, Lebrun R, Scheuring S, Sturgis JN | Proc Natl Acad Sci U S A | 10.1073/pnas.0914854107 | 2010 | Cross-Linking Reagents, Light, Light-Harvesting Protein Complexes/*chemistry/*metabolism, Models, Molecular, Photosynthesis, Rhodospirillaceae/*metabolism/radiation effects, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization | |
| Phylogeny | 21705442 | Phaeospirillum tilakii sp. nov., a phototrophic alphaproteobacterium isolated from aquatic sediments. | Raj PS, Chakravarthy SK, Ramaprasad EVV, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.032250-0 | 2011 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, *Phototrophic Processes, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/*isolation & purification/physiology, Rivers, Sequence Analysis, DNA | Genetics |
| Genetics | 22689244 | Draft genome sequence of the purple photosynthetic bacterium Phaeospirillum molischianum DSM120, a particularly versatile bacterium. | Duquesne K, Prima V, Ji B, Rouy Z, Medigue C, Talla E, Sturgis JN | J Bacteriol | 10.1128/JB.00605-12 | 2012 | Bacterial Proteins/genetics, *Genome, Bacterial, Molecular Sequence Data, *Photosynthesis, Rhodospirillaceae/classification/*genetics/metabolism/physiology, *Sequence Analysis, DNA | Transcriptome |
| Metabolism | 25536050 | Stark absorption spectroscopy on the carotenoids bound to B800-820 and B800-850 type LH2 complexes from a purple photosynthetic bacterium, Phaeospirillum molischianum strain DSM120. | Horibe T, Qian P, Hunter CN, Hashimoto H | Arch Biochem Biophys | 10.1016/j.abb.2014.12.015 | 2014 | *Absorption, Physicochemical, Amino Acid Sequence, Carotenoids/*chemistry/*metabolism, Light-Harvesting Protein Complexes/chemistry/*metabolism, Molecular Sequence Data, *Photosynthesis, Rhodospirillaceae/*metabolism, *Spectrum Analysis | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2105 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 120) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-120 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83128 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID4919.1 | StrainInfo: A central database for resolving microbial strain identifiers |