Strain identifier
BacDive ID: 139510
Type strain:
Species: Mycobacterium timonense
Strain Designation: 3256799
Strain history: CIP <- 2008, M. Drancourt, Timone Hosp., Marseille, France: strain 3256799
NCBI tax ID(s): 701043 (species)
General
@ref: 41775
BacDive-ID: 139510
keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped
description: Mycobacterium timonense 3256799 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Mycobacteriaceae.
NCBI tax id
- NCBI tax id: 701043
- Matching level: species
strain history
@ref | history |
---|---|
41775 | 2008, M. Drancourt, La Timone Hosp., Marseille, France: strain 3256799 |
41775 | CIP <- 2008, M. Drancourt, Timone Hosp., Marseille, France: strain 3256799 |
doi: 10.13145/bacdive139510.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium timonense
- full scientific name: Mycobacterium timonense Ben Salah et al. 2009
@ref: 41775
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Mycobacteriales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium timonense
strain designation: 3256799
type strain: no
Morphology
cell morphology
- @ref: 41775
- gram stain: negative
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41775 | MEDIUM 93 - for Mycobacterium avium subsp. sylvaticum | yes | Distilled water make up to (900.000 ml);Glycerol (4.500 ml);Middlebrook7H10 agar (17.000 g);Middelbrook OADC enrichment (100.000 ml) | |
41775 | CIP Medium 93 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=93 |
culture temp
- @ref: 41775
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 41775
- oxygen tolerance: obligate aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
41775 | 17632 | nitrate | + | reduction |
41775 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 41775
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
41775 | oxidase | - | |
41775 | catalase | + | 1.11.1.6 |
41775 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41775 | - | + | - | + | - | + | - | + | + | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type |
---|---|---|---|---|---|
41775 | Marseille | France | FRA | Europe | |
41775 | Marseille | France | FRA | Europe | Human, Spit |
Safety information
risk assessment
- @ref: 41775
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 41775
culture collection no.: CIP 109829, CCUG 56328
straininfo link
- @ref: 95999
- straininfo: 395679
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41775 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109829 | Collection of Institut Pasteur (CIP 109829) | |
68382 | Automatically annotated from API zym | |||
95999 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID395679.1 |