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Strain identifier

BacDive ID: 139460

Type strain: No

Species: Enterococcus faecium

Strain history: <- CECT; CECT8293 <- CIP; CIP 106876 <- K.A. Mooijman, RIVM; WR63

NCBI tax ID(s): 1352 (species)

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General

@ref: 65758

BacDive-ID: 139460

DSM-Number: 109923

keywords: genome sequence, Bacteria, mesophilic

description: Enterococcus faecium CIP 106876 is a mesophilic bacterium of the family Enterococcaceae.

NCBI tax id

  • NCBI tax id: 1352
  • Matching level: species

strain history

doi: 10.13145/bacdive139460.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus faecium
  • full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus faecium

@ref: 65758

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus faecium

full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 96.876

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41681MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
65758TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
65758COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693

culture temp

@refgrowthtypetemperaturerange
41681positivegrowth37mesophilic
65758positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.035

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 91.169

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan-builds acid from
6838128087glycogen-builds acid from
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose+builds acid from
6838117992sucrose-builds acid from
6838116634raffinose-builds acid from
6838127082trehalose+builds acid from
6838117716lactose+builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol+builds acid from
6838116988D-ribose+builds acid from
6838129016arginine+hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase+3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
65758++----++-++--+--+-++++---+--+/----
65758+++---++-++--+--+-+++++--+--+---

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typelatitudelongitude
41681NetherlandsNLDEurope
65758NetherlandsNLDEuropewater52.2135.2794

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

  • @ref: 65758
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus faecium NCTC13169GCA_900447945contigncbi1352
66792Enterococcus faecium strain NCTC131691352.4070wgspatric1352
66792Thaumarchaeota archaeon ZH-13nov19-116GCA_938049665contigpatric2026795

External links

@ref: 65758

culture collection no.: CIP 106876, NCTC 13169, WDCM 00178, CCM 7800, CECT 8293, DSM 109923, WR 63

straininfo link

@refpassport
20218http://www.straininfo.net/strains/305259
20218http://www.straininfo.net/strains/305260
20218http://www.straininfo.net/strains/898691
20218http://www.straininfo.net/strains/898690

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
41681Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19054 Collection of Institut Pasteur (CIP 106876)
65758Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-109923Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 109923)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes