Strain identifier

BacDive ID: 13945

Type strain: Yes

Species: Magnetospirillum bellicum

Strain Designation: VDY

Strain history: <- J. D. Coates, Univ. of California, Berkeley, USA; VDY <- J. C. Thrash {2006}

NCBI tax ID(s): 425942 (species)

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General

@ref: 15873

BacDive-ID: 13945

DSM-Number: 21662

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Magnetospirillum bellicum VDY is an anaerobe, mesophilic bacterium that was isolated from cathodic chamber of perchlorate reducing enrichment.

NCBI tax id

  • NCBI tax id: 425942
  • Matching level: species

strain history

  • @ref: 15873
  • history: <- J. D. Coates, Univ. of California, Berkeley, USA; VDY <- J. C. Thrash {2006}

doi: 10.13145/bacdive13945.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Magnetospirillum
  • species: Magnetospirillum bellicum
  • full scientific name: Magnetospirillum bellicum corrig. Thrash et al. 2021

  • synonyms

    • @ref: 20215
    • synonym: Magnetospirillum bellicus

@ref: 15873

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Magnetospirillum

species: Magnetospirillum bellicum

full scientific name: Magnetospirillum bellicum

strain designation: VDY

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 15873
  • name: FWM MEDIUM (PERCHLORATE) (DSMZ Medium 503b)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium503b.pdf

culture temp

  • @ref: 15873
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 15873
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 15873
  • sample type: cathodic chamber of perchlorate reducing enrichment
  • geographic location: Strawberry Creek, University of Berkeley, California
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other

taxonmaps

  • @ref: 69479
  • File name: preview.99_17397.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_1587;97_6183;98_13172;99_17397&stattab=map
  • Last taxonomy: Magnetospirillum bellicus subclade
  • 16S sequence: EF405824
  • Sequence Identity:
  • Total samples: 11
  • soil counts: 2
  • aquatic counts: 9

Sequence information

16S sequences

  • @ref: 15873
  • description: Magnetospirillum bellicus strain VDY 16S ribosomal RNA gene, complete sequence
  • accession: EF405824
  • length: 1460
  • database: ena
  • NCBI tax ID: 425942

Genome sequences

  • @ref: 66792
  • description: Magnetospirillum bellicum VDY
  • accession: 2546825520
  • assembly level: draft
  • database: img
  • NCBI tax ID: 425942

GC content

  • @ref: 15873
  • GC-content: 64.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15873

culture collection no.: DSM 21662, ATCC BAA 1730

straininfo link

  • @ref: 83118
  • straininfo: 400757

literature

  • topic: Phylogeny
  • Pubmed-ID: 20495050
  • title: Magnetospirillum bellicus sp. nov., a novel dissimilatory perchlorate-reducing alphaproteobacterium isolated from a bioelectrical reactor.
  • authors: Thrash JC, Ahmadi S, Torok T, Coates JD
  • journal: Appl Environ Microbiol
  • DOI: 10.1128/AEM.00015-10
  • year: 2010
  • mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Bioelectric Energy Sources/*microbiology, California, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Electrodes/microbiology, Locomotion, Magnetospirillum/*classification/genetics/isolation & purification/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Perchlorates/*metabolism, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
15873Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21662)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21662
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83118Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400757.1StrainInfo: A central database for resolving microbial strain identifiers