Strain identifier
BacDive ID: 139430
Type strain: 
Species: Latilactobacillus sakei
Strain Designation: 160x1
Strain history: CIP <- 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 160x1
NCBI tax ID(s): 1599 (species)
version 8.1 (current version)
General
@ref: 41613
BacDive-ID: 139430
keywords: genome sequence, Bacteria, mesophilic
description: Latilactobacillus sakei 160x1 is a mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 1599
- Matching level: species
strain history
| @ref | history |
|---|---|
| 41613 | 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 160x1 |
| 41613 | CIP <- 2015, S. Chaillou, INRA, Jouy en Josas, France: strain 160x1 |
doi: 10.13145/bacdive139430.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Latilactobacillus
- species: Latilactobacillus sakei
- full scientific name: Latilactobacillus sakei (Katagiri et al. 1934) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus sakei 20215 Lactobacillus bavaricus 20215 Lactobacillus sake
@ref: 41613
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus sakei
strain designation: 160x1
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain | cell shape |
|---|---|---|---|---|
| 69480 | no | 92.965 | ||
| 69480 | 100 | positive | ||
| 41613 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41613 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
| 41613 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
- @ref: 41613
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 41613 | Jouy en Josas | France | FRA | Europe | ||
| 41613 | Jouy en Josas | France | FRA | Europe | Animal, Horse, fresh meat | 1981-01-02 |
Safety information
risk assessment
- @ref: 41613
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Lactobacillus sakei strain J160x1
- accession: 1599.106
- assembly level: wgs
- database: patric
- NCBI tax ID: 1599
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 94.886 | no |
| gram-positive | yes | 96.526 | no |
| anaerobic | no | 94.529 | no |
| aerobic | no | 96.96 | no |
| halophile | yes | 92.924 | no |
| spore-forming | no | 93.932 | no |
| thermophile | no | 99.535 | yes |
| glucose-util | yes | 92.545 | no |
| flagellated | no | 98.739 | no |
| glucose-ferment | yes | 84.805 | no |
External links
@ref: 41613
culture collection no.: CIP 110932
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41613 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110932 | Collection of Institut Pasteur (CIP 110932) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |