Strain identifier

BacDive ID: 139239

Type strain: No

Species: Rhizobium rhizogenes

Strain Designation: TR 104, 5

Strain history: CIP <- 1995, ATCC <- M.P. Starr: strain TR 104 <- W.J. Dowson: strain 5 <- A.J. Riker

NCBI tax ID(s): 359 (species)

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General

@ref: 41365

BacDive-ID: 139239

keywords: Bacteria, psychrophilic, Gram-negative, motile, rod-shaped

description: Rhizobium rhizogenes TR 104 is a psychrophilic, Gram-negative, motile bacterium of the family Rhizobiaceae.

NCBI tax id

  • NCBI tax id: 359
  • Matching level: species

strain history

@refhistory
67770IAM 13938 <-- NCPPB 2409 <-- A. Kerr 67 <-- ICPB TR104 <-- W. J. Dowson 5.
41365CIP <- 1995, ATCC <- M.P. Starr: strain TR 104 <- W.J. Dowson: strain 5 <- A.J. Riker

doi: 10.13145/bacdive139239.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Rhizobium
  • species: Rhizobium rhizogenes
  • full scientific name: Rhizobium rhizogenes (Riker et al. 1930) Young et al. 2001

  • synonyms

    @refsynonym
    20215Phytomonas rhizogenes
    20215Agrobacterium rhizogenes

@ref: 41365

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhizobiaceae

genus: Rhizobium

species: Rhizobium rhizogenes

strain designation: TR 104, 5

type strain: no

Morphology

cell morphology

  • @ref: 41365
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41365MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
41365CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
41365positivegrowth22psychrophilic
67770positivegrowth25mesophilic
41365positivegrowth30mesophilic
41365nogrowth5psychrophilic
41365nogrowth10psychrophilic
41365nogrowth41thermophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
413654853esculin+hydrolysis
4136517632nitrate-reduction
4136516301nitrite-reduction
4136517234glucose+degradation

antibiotic resistance

  • @ref: 41365
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 41365
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
41365oxidase+
41365alcohol dehydrogenase-1.1.1.1
41365gelatinase-
41365amylase-
41365DNase-
41365catalase+1.11.1.6
41365tween esterase+
41365lysine decarboxylase-4.1.1.18
41365ornithine decarboxylase-4.1.1.17
41365urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41365--------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41365+++++-++-++++++++++++++++-++-+++++++++-+-+------++++---++--++-+++-----++-+-+---++-----+-++++-++-+++

Safety information

risk assessment

  • @ref: 41365
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41365

culture collection no.: CIP 104330, ATCC 13333, JCM 20990, IAM 13938, ICPB TR104, IFO 13259, KCTC 2780, NBRC 13259, NCPPB 2409

straininfo link

  • @ref: 95788
  • straininfo: 535

literature

  • Pubmed-ID: 24981787
  • title: Induction of hairy roots by various strains of Agrobacterium rhizogenes in different types of Capsicum species explants.
  • authors: Md Setamam N, Jaafar Sidik N, Abdul Rahman Z, Che Mohd Zain CR
  • journal: BMC Res Notes
  • DOI: 10.1186/1756-0500-7-414
  • year: 2014
  • mesh: Agrobacterium/*physiology, Capsicum/*growth & development/microbiology, Coculture Techniques, Cotyledon/growth & development/microbiology, Hypocotyl/growth & development/microbiology, Plant Roots/*growth & development/microbiology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41365Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104330Collection of Institut Pasteur (CIP 104330)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
95788Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID535.1