Strain identifier

BacDive ID: 1391

Type strain: Yes

Species: Thalassobacillus devorans

Strain Designation: G-19.1

Strain history: CIP <- 2005, CECT <- A. Ventura: strain G-19.1

NCBI tax ID(s): 279813 (species)

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General

@ref: 6676

BacDive-ID: 1391

DSM-Number: 16966

keywords: genome sequence, 16S sequence, Bacteria, aerobe, moderately halophilic, spore-forming, mesophilic, Gram-positive, motile, rod-shaped, colony-forming

description: Thalassobacillus devorans G-19.1 is an aerobe, moderately halophilic, spore-forming bacterium that forms circular colonies and was isolated from saline sals.

NCBI tax id

  • NCBI tax id: 279813
  • Matching level: species

strain history

@refhistory
6676<- E. Mellado <- M. T. García; G-19.1 {2003}
118920CIP <- 2005, CECT <- A. Ventura: strain G-19.1

doi: 10.13145/bacdive1391.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Thalassobacillus
  • species: Thalassobacillus devorans
  • full scientific name: Thalassobacillus devorans García et al. 2005

@ref: 6676

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Thalassobacillus

species: Thalassobacillus devorans

full scientific name: Thalassobacillus devorans García et al. 2005

strain designation: G-19.1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
23021positive2.0-4.0 µm1.0-1.2 µmrod-shapedyes
69480yes97.837
69480positive100
118920positiverod-shapedyes

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium usedhemolysis ability
230211.0-2.0 mmcreamcircular2 daysSW-10 medium
1189201

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6676BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 40.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23021SW-10 mediumyes
40065MEDIUM 15 - Mueller Hinton agaryesDistilled water make up to (1000.000 ml);Mueller Hinton agar (38.000 g)
118920CIP Medium 15yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=15

culture temp

@refgrowthtypetemperaturerange
6676positivegrowth37mesophilic
23021positivegrowth15.0-45.0
23021positiveoptimum37.0mesophilic
40065positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
23021positiveoptimum7.0
23021positivegrowth6.0-10.0alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6676aerobe
23021obligate aerobe
118920obligate aerobe

spore formation

@refspore descriptiontype of sporespore formationconfidence
23021ellipsoidal,centralendosporeyes
69481yes100
69480yes100

halophily

@refhalophily levelsalttested relationconcentrationgrowth
23021moderately halophilicNaCloptimum7.5-10.0 %
23021NaClgrowth0.5-20.0 %positive

murein

  • @ref: 23021
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2302127897tryptophan-energy source
2302117234glucose-fermentation
23021casein-hydrolysis
230214853esculin-hydrolysis
2302128017starch-hydrolysis
2302115588D-malate-respiration
2302116651(S)-lactate-respiration
2302115589L-malate-respiration
23021172562-deoxyadenosine-respiration
23021645522-hydroxybutyrate-respiration
23021309162-oxoglutarate-respiration
23021620642,3-butanediol-respiration
23021167244-hydroxybutyrate-respiration
23021181014-hydroxyphenylacetic acid-respiration
2302116335adenosine-respiration
2302140585alpha-cyclodextrin-respiration
2302136219alpha-lactose-respiration
2302116027amp-respiration
2302127613amygdalin-respiration
2302118305arbutin-respiration
23021495055beta-cyclodextrin-respiration
2302117057cellobiose-respiration
2302115570D-alanine-respiration
2302118333D-arabitol-respiration
2302178697D-fructose 6-phosphate-respiration
2302112936D-galactose-respiration
2302118024D-galacturonic acid-respiration
230218391D-gluconate-respiration
2302114314D-glucose 6-phosphate-respiration
2302128053melibiose-respiration
2302116634raffinose-respiration
2302116988D-ribose-respiration
2302116443D-tagatose-respiration
2302165327D-xylose-respiration
2302128066gentiobiose-respiration
2302129042glucose 1-phosphate-respiration
2302117754glycerol-respiration
2302114336glycerol 1-phosphate-respiration
2302128087glycogen-respiration
2302117596inosine-respiration
2302115443inulin-respiration
2302121217L-alaninamide-respiration
2302116977L-alanine-respiration
2302173786L-alanylglycine-respiration
2302130849L-arabinose-respiration
2302117196L-asparagine-respiration
2302118287L-fucose-respiration
2302129985L-glutamate-respiration
2302118183L-pyroglutamic acid-respiration
2302162345L-rhamnose-respiration
2302117115L-serine-respiration
2302175144lactamide-respiration
230216359lactulose-respiration
2302128808mannan-respiration
2302174611methyl (R)-lactate-respiration
2302155507methyl alpha-D-galactoside-respiration
23021320061methyl alpha-D-glucopyranoside-respiration
2302143943methyl alpha-D-mannoside-respiration
2302117540methyl beta-D-galactoside-respiration
23021320055methyl beta-D-glucopyranoside-respiration
2302151850methyl pyruvate-respiration
2302175146monomethyl succinate-respiration
2302117268myo-inositol-respiration
2302144337N-acetyl-L-glutamate-respiration
2302173784glycyl-l-glutamate-respiration
2302117272propionate-respiration
2302117148putrescine-respiration
2302117814salicin-respiration
2302132488sedoheptulosan-respiration
2302117164stachyose-respiration
23021143136succinamate-respiration
2302130031succinate-respiration
2302163528thymidine 5'-monophosphate-respiration
2302132528turanose-respiration
2302153423tween 40-respiration
2302153426tween 80-respiration
2302116695uridine 5'-monophosphate-respiration
2302117151xylitol-respiration
2302115824D-fructose+builds acid from
2302117634D-glucose+builds acid from
2302116024D-mannose+builds acid from
2302116551D-trehalose+builds acid from
230215291gelatin+hydrolysis
2302153426tween 80+hydrolysis
2302117632nitrate+reduction
23021286442-oxopentanoate+respiration
23021370543-hydroxybutyrate+respiration
23021739183-O-methyl-D-glucose+respiration
2302130089acetate+respiration
2302117925alpha-D-glucose+respiration
2302115824D-fructose+respiration
2302116899D-mannitol+respiration
2302116024D-mannose+respiration
230216731melezitose+respiration
2302127605D-psicose+respiration
2302117924D-sorbitol+respiration
2302116551D-trehalose+respiration
2302123652dextrin+respiration
2302117306maltose+respiration
2302161993maltotriose+respiration
2302163153N-acetyl-D-mannosamine+respiration
23021506227N-acetylglucosamine+respiration
2302118394palatinose+respiration
2302115361pyruvate+respiration
2302117992sucrose+respiration
2302117748thymidine+respiration
2302116704uridine+respiration
11892017632nitrate+reduction
11892016301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
2302135581indoleno
2302115688acetoinno
11892035581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-testindole test
2302115688acetoin-
2302117234glucose-
2302135581indole-

enzymes

@refvalueactivityec
23021cytochrome oxidase-1.9.3.1
23021tryptophan deaminase-4.1.99.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
118920oxidase-
118920alcohol dehydrogenase-1.1.1.1
118920catalase+1.11.1.6
118920lysine decarboxylase-4.1.1.18
118920ornithine decarboxylase-4.1.1.17
118920urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118920--++-+---+++++-+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
6676saline salsSpainESPEurope
23021sterile modified mineral medium M63KOH, 0.075 M; KH2PO4, 0.1 M; (NH4)2SO4, 0.015 M; 1 % (v/v) MgSO4/FeSO4 solution (MgSO4, 1.6 mM; FeSO4, 39 mM) with 10 % NaCl, 0.005 % yeast extract, phenol (concentration of 0.05 % (w/v))4 days37.0
118920Environment, Saline soilSpainESPEurope

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_5927.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_469;97_3483;98_4405;99_5927&stattab=map
  • Last taxonomy: Thalassobacillus devorans
  • 16S sequence: AJ717299
  • Sequence Identity:
  • Total samples: 989
  • soil counts: 553
  • aquatic counts: 283
  • animal counts: 90
  • plant counts: 63

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
66761Risk group (German classification)
1189201Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6676
  • description: Thalassobacillus devorans 16S rRNA gene, type strain G-19.1T
  • accession: AJ717299
  • length: 1506
  • database: ena
  • NCBI tax ID: 279813

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Thalassobacillus devorans CCM 7282GCA_014635125scaffoldncbi279813
66792Thalassobacillus devorans CECT 7046GCA_011761345scaffoldncbi279813
66792Thalassobacillus devorans strain CCM 7282279813.5wgspatric279813
66792Thalassobacillus devorans strain CECT 7046279813.4wgspatric279813
66792Thalassobacillus devorans CECT 70462824388614draftimg279813

GC content

  • @ref: 23021
  • GC-content: 42.4

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedyes66.051no
gram-positiveyes87.771no
anaerobicno98.618yes
aerobicyes94.94yes
halophileyes79.017no
spore-formingyes91.675no
thermophileno94.914no
glucose-utilyes87.907no
motileyes86.428yes
glucose-fermentno92.525yes

External links

@ref: 6676

culture collection no.: DSM 16966, CCM 7282, CECT 7046, CIP 108959

straininfo link

  • @ref: 71042
  • straininfo: 265633

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16166667Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacterium.Garcia MT, Gallego V, Ventosa A, Mellado EInt J Syst Evol Microbiol10.1099/ijs.0.63560-02005Bacillaceae/*classification/*genetics/growth & development/isolation & purification, Bacterial Typing Techniques, Base Composition, Biodegradation, Environmental, DNA, Bacterial, *Environment, Genes, rRNA, Genotype, Molecular Sequence Data, Phenol/*metabolism, Phenotype, Phylogeny, RNA, Ribosomal, 16S, *Sodium Chloride, SpainGenetics
Phylogeny17911315Salsuginibacillus kocurii gen. nov., sp. nov., a moderately halophilic bacterium from soda-lake sediment.Carrasco IJ, Marquez MC, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.65136-02007Bacillaceae/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids, Genes, rRNA, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Locomotion/physiology, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Spores, Bacterial/cytology, TemperatureGenetics
Phylogeny19622638Thalassobacillus cyri sp. nov., a moderately halophilic Gram-positive bacterium from a hypersaline lake.Sanchez-Porro C, Amoozegar MA, Rohban R, Hajighasemi M, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.010488-02009Bacillaceae/classification/genetics/*isolation & purification/*metabolism, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolism, *Water MicrobiologyMetabolism
Phylogeny19854876Thalassobacillus hwangdonensis sp. nov., isolated from a tidal flat sediment.Lee SY, Oh TK, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.016204-02009Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyMetabolism
Phylogeny20562240Thalassobacillus pellis sp. nov., a moderately halophilic, Gram-positive bacterium isolated from salted hides.Sanchez-Porro C, Yilmaz P, de la Haba RR, Birbir M, Ventosa AInt J Syst Evol Microbiol10.1099/ijs.0.024778-02010Bacillaceae/*classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/*metabolismMetabolism
Phylogeny26843374Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil.Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0009542016Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6676Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16966)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16966
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23021María Teresa García,Virginia Gallego,Antonio Ventosa,Encarnacion Mellado10.1099/ijs.0.63560-0Thalassobacillus devorans gen. nov., sp. nov., a moderately halophilic, phenol-degrading, Gram-positive bacteriumIJSEM 55: 1789-1795 200516166667
40065Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6646
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71042Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID265633.1StrainInfo: A central database for resolving microbial strain identifiers
118920Curators of the CIPCollection of Institut Pasteur (CIP 108959)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108959