Strain identifier
BacDive ID: 13909
Type strain: 
Species: Thauera aromatica
Strain Designation: AR-1
Strain history: <- C. Gallus, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; AR-1 <- N. Gorny {1992}
NCBI tax ID(s): 59405 (species)
version 8.1 (current version)
General
@ref: 4403
BacDive-ID: 13909
DSM-Number: 11528
keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic
description: Thauera aromatica AR-1 is a facultative anaerobe, mesophilic bacterium that was isolated from activated sludge, sewage plant.
NCBI tax id
- NCBI tax id: 59405
- Matching level: species
strain history
- @ref: 4403
- history: <- C. Gallus, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; AR-1 <- N. Gorny {1992}
doi: 10.13145/bacdive13909.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Thauera
- species: Thauera aromatica
- full scientific name: Thauera aromatica Anders et al. 1995
@ref: 4403
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Thauera
species: Thauera aromatica
full scientific name: Thauera aromatica Anders et al. 1995
strain designation: AR-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 4403
- name: THAUERA AROMATICA MEDIUM (ANAEROB) (DSMZ Medium 855)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium855.pdf
culture temp
- @ref: 4403
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 4403
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4403
- sample type: activated sludge, sewage plant
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Activated sludge |
| #Engineered | #Waste | #Water treatment plant |
Safety information
risk assessment
- @ref: 4403
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Thauera aromatica AR-1
- accession: GCA_023093675
- assembly level: contig
- database: ncbi
- NCBI tax ID: 59405
GC content
- @ref: 4403
- GC-content: 66.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 70.498 | no |
| gram-positive | no | 99.19 | no |
| anaerobic | no | 91.548 | yes |
| aerobic | no | 74.345 | no |
| halophile | no | 89.923 | no |
| spore-forming | no | 94.559 | no |
| motile | yes | 88.435 | no |
| glucose-ferment | no | 89.426 | no |
| thermophile | no | 96.329 | yes |
| glucose-util | no | 82.811 | no |
External links
@ref: 4403
culture collection no.: DSM 11528
straininfo link
- @ref: 83084
- straininfo: 49132
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 9531634 | Anaerobic degradation of alpha-resorcylate by Thauera aromatica strain AR-1 proceeds via oxidation and decarboxylation to hydroxyhydroquinone. | Gallus C, Schink B | Arch Microbiol | 10.1007/s002030050579 | 1998 | Anaerobiosis, Biodegradation, Environmental, Decarboxylation, Enzyme Activation, Gram-Negative Anaerobic Bacteria/*metabolism, Hydroquinones/*metabolism, Hydroxybenzoates/analysis/chemistry/*metabolism, Mitochondrial Trifunctional Protein, Multienzyme Complexes/metabolism, Oxidation-Reduction, Oxidoreductases/analysis/metabolism, *Oxidoreductases Acting on CH-CH Group Donors, Phloroglucinol/metabolism, Substrate Specificity | Enzymology |
| Metabolism | 10795679 | Two distinct pathways for anaerobic degradation of aromatic compounds in the denitrifying bacterium Thauera aromatica strain AR-1. | Philipp B, Schink B | Arch Microbiol | 10.1007/s002039900112 | 2000 | Acyl Coenzyme A/metabolism, Benzoates/*metabolism, Biodegradation, Environmental, Enzyme Induction, Gene Expression Regulation, Bacterial, Hydroquinones/metabolism, Hydroxybenzoates/*metabolism, Nitrates/*metabolism, Oxidation-Reduction, Oxidoreductases/metabolism, *Oxidoreductases Acting on CH-CH Group Donors, Thauera/growth & development/*metabolism | Enzymology |
| Metabolism | 12076800 | Anaerobic degradation of protocatechuate (3,4-dihydroxybenzoate) by Thauera aromatica strain AR-1. | Philipp B, Kemmler D, Hellstern J, Gorny N, Caballero A, Schink B | FEMS Microbiol Lett | 10.1111/j.1574-6968.2002.tb11257.x | 2002 | Acyl Coenzyme A/*metabolism, Anaerobiosis, Biodegradation, Environmental, Culture Media, Hydroquinones/*metabolism, Hydroxybenzoates/*metabolism, Thauera/enzymology/growth & development/*metabolism | Cultivation |
| Metabolism | 26253674 | Identification of the Gene Cluster for the Anaerobic Degradation of 3,5-Dihydroxybenzoate (alpha-Resorcylate) in Thauera aromatica Strain AR-1. | Molina-Fuentes A, Pacheco D, Marin P, Philipp B, Schink B, Marques S | Appl Environ Microbiol | 10.1128/AEM.01698-15 | 2015 | Anaerobiosis/genetics, Gene Expression Regulation, Bacterial, Hydroxybenzoates/*metabolism, Multigene Family/genetics, Mutation, Reverse Transcriptase Polymerase Chain Reaction, Thauera/genetics/*metabolism | |
| Metabolism | 30389770 | DbdR, a New Member of the LysR Family of Transcriptional Regulators, Coordinately Controls Four Promoters in the Thauera aromatica AR-1 3,5-Dihydroxybenzoate Anaerobic Degradation Pathway. | Pacheco-Sanchez D, Molina-Fuentes A, Marin P, Diaz-Romero A, Marques S | Appl Environ Microbiol | 10.1128/AEM.02295-18 | 2019 | Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics/metabolism, *Gene Expression Regulation, Bacterial, Hydroxybenzoates/*metabolism, Resorcinols/*metabolism, Sequence Alignment, Thauera/*genetics/metabolism, Transcription Factors/chemistry/*genetics/metabolism, *Transcription, Genetic | |
| Metabolism | 30884168 | Occurrence and diversity of the oxidative hydroxyhydroquinone pathway for the anaerobic degradation of aromatic compounds in nitrate-reducing bacteria. | Pacheco-Sanchez D, Rama-Garda R, Marin P, Martirani-Von Abercron SM, Marques S | Environ Microbiol Rep | 10.1111/1758-2229.12752 | 2019 | Anaerobiosis, Bacterial Proteins/genetics, Betaproteobacteria/classification/genetics/*isolation & purification/*metabolism, Environmental Microbiology, Genetic Variation, Genome, Bacterial/genetics, Hydroquinones/*metabolism, Hydroxybenzoates/metabolism, Metabolic Networks and Pathways/*genetics, Multigene Family, Nitrates/*metabolism, Oxidation-Reduction, Phylogeny, Resorcinols/metabolism | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4403 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11528) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11528 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 83084 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49132.1 | StrainInfo: A central database for resolving microbial strain identifiers |