Strain identifier

BacDive ID: 139051

Type strain: No

Species: Vibrio parahaemolyticus

Strain Designation: R777

Strain history: CIP <- 1973, Lab. Ident. Inst. Pasteur, Paris, France: strain R777

NCBI tax ID(s): 670 (species)

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General

@ref: 41079

BacDive-ID: 139051

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Vibrio parahaemolyticus R777 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Mussel.

NCBI tax id

  • NCBI tax id: 670
  • Matching level: species

strain history

@refhistory
410791973, Lab. Ident. Inst. Pasteur, Paris, France: strain R777
41079CIP <- 1973, Lab. Ident. Inst. Pasteur, Paris, France: strain R777

doi: 10.13145/bacdive139051.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio parahaemolyticus
  • full scientific name: Vibrio parahaemolyticus (Fujino et al. 1951) Sakazaki et al. 1963 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Pasteurella parahaemolytica
    20215Beneckea parahaemolytica

@ref: 41079

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio parahaemolyticus

strain designation: R777

type strain: no

Morphology

cell morphology

  • @ref: 41079
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41079MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41079CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
41079positivegrowth30
41079positivegrowth15-41
41079nogrowth5

Physiology and metabolism

oxygen tolerance

  • @ref: 41079
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
41079NaClpositivegrowth2-10 %
41079NaClnogrowth0 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
41079citrate-carbon source16947
41079esculin-hydrolysis4853
41079glucose+fermentation17234
41079lactose-fermentation17716
41079nitrate+reduction17632
41079nitrite-reduction16301
41079sodium thiosulfate-builds gas from132112
41079glucose+degradation17234

metabolite production

  • @ref: 41079
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4107915688acetoin-
4107917234glucose+

enzymes

@refvalueactivityec
41079oxidase+
41079beta-galactosidase-3.2.1.23
41079alcohol dehydrogenase-1.1.1.1
41079gelatinase+
41079amylase+
41079DNase+
41079caseinase+3.4.21.50
41079catalase+1.11.1.6
41079tween esterase+
41079gamma-glutamyltransferase+2.3.2.2
41079lecithinase+
41079lipase+
41079lysine decarboxylase+4.1.1.18
41079ornithine decarboxylase+4.1.1.17
41079phenylalanine ammonia-lyase-4.3.1.24
41079protease+
41079tryptophan deaminase-
41079urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41079-+++-+--+-++-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
41079---++----++++----+---+-----+---+---++-------+-+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41079+++++----++------+-++-----+----+-+---------------+----+----++-----------+--+---++-+---+--++++++-++-

Isolation, sampling and environmental information

isolation

  • @ref: 41079
  • sample type: Mussel
  • isolation date: 1973

Safety information

risk assessment

  • @ref: 41079
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: V.parahaemolyticus (CIP 73.30) gene for 16S ribosomal RNA
  • accession: X74721
  • length: 1471
  • database: nuccore
  • NCBI tax ID: 670

External links

@ref: 41079

culture collection no.: CIP 73.30

straininfo link

  • @ref: 95635
  • straininfo: 70620

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41079Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2073.30Collection of Institut Pasteur (CIP 73.30)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
95635Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70620.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy