Strain identifier
BacDive ID: 139005
Type strain: 
Species: Shigella dysenteriae
Strain Designation: Norwich
Strain history: CIP <- 1952, Dysentery Ref. Lab., Oxford, UK: strain Norwich
NCBI tax ID(s): 622 (species)
version 9.1 (current version)
General
@ref: 41007
BacDive-ID: 139005
keywords: genome sequence, Bacteria, Gram-negative
description: Shigella dysenteriae Norwich is a Gram-negative bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 622
- Matching level: species
strain history
| @ref | history |
|---|---|
| 41007 | 1952, Dysentery Ref. Lab., Oxford, UK: strain Norwich |
| 41007 | CIP <- 1952, Dysentery Ref. Lab., Oxford, UK: strain Norwich |
doi: 10.13145/bacdive139005.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Shigella
- species: Shigella dysenteriae
- full scientific name: Shigella dysenteriae (Shiga 1897) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus dysentericus
@ref: 41007
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Shigella
species: Shigella dysenteriae
strain designation: Norwich
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.75
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41007 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 41007 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 41007
- growth: positive
- type: growth
- temperature: 30
Safety information
risk assessment
- @ref: 41007
- biosafety level: 3
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Shigella dysenteriae strain CIP52.27
- accession: 622.124
- assembly level: wgs
- database: patric
- NCBI tax ID: 622
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.75 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.916 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.948 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 74.099 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 53.799 | no |
External links
@ref: 41007
culture collection no.: CIP 52.27
straininfo link
- @ref: 95593
- straininfo: 70114
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41007 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.27 | Collection of Institut Pasteur (CIP 52.27) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 95593 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID70114.1 |