Strain identifier
BacDive ID: 1390
Type strain: 
Species: Saccharococcus thermophilus
Strain Designation: 657
Strain history: <- CCM <- R. Nystrand; 657
NCBI tax ID(s): 29396 (species)
version 9.1 (current version)
General
@ref: 1752
BacDive-ID: 1390
DSM-Number: 4749
keywords: genome sequence, 16S sequence, Bacteria, spore-forming
description: Saccharococcus thermophilus 657 is a spore-forming bacterium that was isolated from beet sugar extraction.
NCBI tax id
- NCBI tax id: 29396
- Matching level: species
strain history
- @ref: 1752
- history: <- CCM <- R. Nystrand; 657
doi: 10.13145/bacdive1390.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Saccharococcus
- species: Saccharococcus thermophilus
- full scientific name: Saccharococcus thermophilus Nystrand 1984
@ref: 1752
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Saccharococcus
species: Saccharococcus thermophilus
full scientific name: Saccharococcus thermophilus Nystrand 1984
strain designation: 657
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1752
- name: TS AGAR (DSMZ Medium 893)
- growth: yes
- link: https://mediadive.dsmz.de/medium/893
- composition: Name: TS AGAR (DSMZ Medium 893) Composition: Agar 15.0 g/l Sucrose 5.0 g/l Tryptone 5.0 g/l Beef extract 3.0 g/l Glucose 1.0 g/l Distilled water
culture temp
- @ref: 1752
- growth: positive
- type: growth
- temperature: 50
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | yes | 90.986 |
| 69481 | yes | 100 |
murein
- @ref: 1752
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
- @ref: 1752
- sample type: beet sugar extraction
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Food |
| #Engineered | #Industrial | #Industrial production |
Safety information
risk assessment
- @ref: 1752
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Saccharococcus thermophilus 16S ribosomal RNA | L09227 | 1538 | nuccore | 29396 |
| 20218 | S.thermophilus gene for 16S ribosomal RNA | X70430 | 1538 | nuccore | 29396 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Saccharococcus thermophilus DSM 4749 | GCA_011761475 | contig | ncbi | 29396 |
| 66792 | Saccharococcus thermophilus strain DSM 4749 | 29396.3 | wgs | patric | 29396 |
| 66792 | Saccharococcus thermophilus DSM 4749 | 2824486690 | draft | img | 29396 |
GC content
- @ref: 1752
- GC-content: 47.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 73.995 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 86.7 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.986 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 66.149 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | yes | 72.445 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 81.23 | no |
External links
@ref: 1752
culture collection no.: DSM 4749, ATCC 43125, CCM 3586
straininfo link
- @ref: 71041
- straininfo: 41663
literature
- topic: Phylogeny
- Pubmed-ID: 29931494
- title: Anoxybacillus sediminis sp. nov., a novel moderately thermophilic bacterium isolated from a hot spring.
- authors: Khan IU, Habib N, Xiao M, Devi AM, Habib M, Hejazi MS, Salam N, Zhi XY, Li WJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-018-1118-5
- year: 2018
- mesh: Anoxybacillus/classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Geologic Sediments/chemistry/*microbiology, Hot Springs/chemistry/*microbiology, Hot Temperature, Phylogeny, RNA, Ribosomal, 16S/genetics, Tibet
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1752 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4749) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4749 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71041 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41663.1 | StrainInfo: A central database for resolving microbial strain identifiers |