General

@ref: 2843

BacDive-ID: 13899

DSM-Number: 6832

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile

description: Propionivibrio limicola GolChi1 is an anaerobe, mesophilic, motile bacterium that was isolated from freshwater anoxic sediment.

NCBI tax id

• NCBI tax id: 167645
• Matching level: species

strain history

• @ref: 2843
• history: <- A. Brune and B. Schink, GolChi1

doi: 10.13145/bacdive13899.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Betaproteobacteria
• order: Rhodocyclales
• family: Rhodocyclaceae
• genus: Propionivibrio
• species: Propionivibrio limicola
• full scientific name: Propionivibrio limicola Brune et al. 2002

@ref: 2843

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Rhizobiales

family: Rhodocyclaceae

genus: Propionivibrio

species: Propionivibrio limicola

full scientific name: Propionivibrio limicola Brune et al. 2002

strain designation: GolChi1

type strain: yes

Morphology

cell morphology

Culture and growth conditions

culture medium

• @ref: 2843
• name: PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298)
• growth: yes
• link: https://mediadive.dsmz.de/medium/298
• composition: Name: PELOBACTER PROPIONICUS MEDIUM (FRESHWATER) (DSMZ Medium 298) Composition: Na2CO3 1.5 g/l NaCl 1.0 g/l 2,3-butanediol 0.9 g/l KCl 0.5 g/l MgCl2 x 6 H2O 0.4 g/l Na2S x 9 H2O 0.36 g/l NH4Cl 0.25 g/l KH2PO4 0.2 g/l CaCl2 x 2 H2O 0.15 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l Sodium resazurin 0.0005 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

culture temp

• @ref: 2843
• growth: positive
• type: growth
• temperature: 30
• range: mesophilic

Physiology and metabolism

oxygen tolerance

• @ref: 2843
• oxygen tolerance: anaerobe

spore formation

Isolation, sampling and environmental information

isolation

• @ref: 2843
• sample type: freshwater anoxic sediment
• country: Germany
• origin.country: DEU
• continent: Europe

isolation source categories

Safety information

risk assessment

• @ref: 2843
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 2843
• description: Propionivibrio limicola 16S rRNA gene, strain GolChi1 T
• accession: AJ307983
• length: 1531
• database: ena
• NCBI tax ID: 167645

Genome sequences

GC content

• @ref: 2843
• GC-content: 61.6
• method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

External links

@ref: 2843

culture collection no.: DSM 6832, JCM 12227

straininfo link

• @ref: 83074
• straininfo: 48302

literature

• topic: Phylogeny
• Pubmed-ID: 11931155
• title: Propionivibrio limicola sp. nov., a fermentative bacterium specialized in the degradation of hydroaromatic compounds, reclassification of Propionibacter pelophilus as Propionivibrio pelophilus comb. nov. and amended description of the genus Propionivibrio.
• authors: Brune A, Ludwig W, Schink B
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/00207713-52-2-441
• year: 2002
• mesh: Anaerobiosis, DNA, Ribosomal/chemistry, Fermentation, Genes, Bacterial, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/metabolism, Molecular Sequence Data, Phenotype, Phylogeny, Quinic Acid/metabolism, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/chemistry, Sequence Homology, Nucleic Acid, Shikimic Acid/metabolism, Species Specificity, Superoxide Dismutase/metabolism, Water Microbiology
• topic2: Metabolism

Reference