Strain identifier

BacDive ID: 138900

Type strain: No

Species: Comamonas terrigena

Strain history: CIP <- 1963, NCIB, Vibrio neocistes <- NCTC <- 1928, H.G. Thornton, Rothamstedt Exp. Stat.

NCBI tax ID(s): 32013 (species)

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General

@ref: 40886

BacDive-ID: 138900

keywords: 16S sequence, Bacteria, aerobe

description: Comamonas terrigena CIP 63.45 is an aerobe bacterium of the family Comamonadaceae.

NCBI tax id

  • NCBI tax id: 32013
  • Matching level: species

strain history

@refhistory
67770J. Tamaoka KS 0107 <-- NCIB 2582 <-- NCTC 2582 <-- H. Thornton ("Vibrio neocistes").
40886CIP <- 1963, NCIB, Vibrio neocistes <- NCTC <- 1928, H.G. Thornton, Rothamstedt Exp. Stat.

doi: 10.13145/bacdive138900.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Comamonas
  • species: Comamonas terrigena
  • full scientific name: Comamonas terrigena (ex Hugh 1962) De Vos et al. 1985

  • synonyms

    @refsynonym
    20215Comamonas terrigena
    20215Comamonas percolans

@ref: 40886

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Comamonas

species: Comamonas terrigena

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40886MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
40886CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
40886positivegrowth30
44542positivegrowth30-37
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 44542
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44542--++-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44542+-------------+-+---+

Isolation, sampling and environmental information

isolation

@refgeographic locationsample typecountryorigin.countrycontinentisolation date
40886Rothamstedt
44542Soil
40886RothamstedEnvironment, SoilUnited KingdomGBREurope1928

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_5975.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_704;97_822;98_4438;99_5975&stattab=map
  • Last taxonomy: Comamonas terrigena subclade
  • 16S sequence: LC379096
  • Sequence Identity:
  • Total samples: 697
  • soil counts: 34
  • aquatic counts: 451
  • animal counts: 190
  • plant counts: 22

Safety information

risk assessment

  • @ref: 40886
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Comamonas terrigena gene for 16S rRNA, partial sequence, strain: JCM 6236
  • accession: LC379096
  • length: 1453
  • database: nuccore
  • NCBI tax ID: 32013

GC content

@refGC-contentmethod
6777065.3high performance liquid chromatography (HPLC)
6777066.1thermal denaturation, midpoint method (Tm)

External links

@ref: 40886

culture collection no.: CIP 63.45, ATCC 14636, LMG 1251, LMG 1252, LMG 5918, LMG 5928, NCIMB 2582, CCUG 2475, NCTC 2582, JCM 6236, IAM 14423

straininfo link

  • @ref: 95533
  • straininfo: 2017

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40886Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.45Collection of Institut Pasteur (CIP 63.45)
44542Curators of the CCUGhttps://www.ccug.se/strain?id=2475Culture Collection University of Gothenburg (CCUG) (CCUG 2475)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID2017.1