Strain identifier

BacDive ID: 138871

Type strain: No

Species: Pseudomonas aeruginosa

Strain Designation: XI/S2/1955-228

Strain history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain XI/S2/1955-228

NCBI tax ID(s): 287 (species)

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General

@ref: 40849

BacDive-ID: 138871

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas aeruginosa XI/S2/1955-228 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

strain history

  • @ref: 40849
  • history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain XI/S2/1955-228

doi: 10.13145/bacdive138871.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 40849

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

strain designation: XI/S2/1955-228

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.214
6948099.989negative
40849yesnegativerod-shaped

pigmentation

  • @ref: 40849
  • production: yes
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40849MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
40849CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
40849positivegrowth30mesophilic
40849positivegrowth25-41
40849nogrowth5psychrophilic
40849nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 40849
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.965

halophily

@refsaltgrowthtested relationconcentration
40849NaClpositivegrowth0-6 %
40849NaClnogrowth8 %
40849NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4084916947citrate+carbon source
408494853esculin-hydrolysis
4084917632nitrate+reduction
4084916301nitrite+reduction
4084915882phenol+degradation
4084917632nitrate+respiration

antibiotic resistance

  • @ref: 40849
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 40849
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
40849oxidase+
40849beta-galactosidase-3.2.1.23
40849alcohol dehydrogenase+1.1.1.1
40849gelatinase+
40849amylase-
40849DNase-
40849caseinase+3.4.21.50
40849catalase+1.11.1.6
40849tween esterase+
40849lecithinase+
40849lipase+
40849lysine decarboxylase-4.1.1.18
40849ornithine decarboxylase-4.1.1.17
40849tryptophan deaminase-
40849urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40849-+++++----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40849++-----------------+------+----+-+--------------+++--+--+-+++-++++-+---++++++++++++++--+++++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 40849
  • sample type: Unknown source

Safety information

risk assessment

  • @ref: 40849
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa NCTC11447GCA_900455405contigncbi287
66792Pseudomonas aeruginosa ATCC 33355GCA_001444765scaffoldncbi287
66792Pseudomonas aeruginosa strain ATCC 33355287.1984wgspatric287
66792Pseudomonas aeruginosa strain NCTC11447287.6518wgspatric287

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
flagellatedyes87.17no
gram-positiveno98.34no
anaerobicno98.546no
aerobicyes93.599no
halophileno91.833no
spore-formingno93.045no
glucose-utilyes89.909no
motileyes89.69no
thermophileno99.862no
glucose-fermentno90.069no

External links

@ref: 40849

culture collection no.: CIP 59.40, ATCC 33355, NCTC 11447

straininfo link

  • @ref: 95507
  • straininfo: 7945

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40849Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.40Collection of Institut Pasteur (CIP 59.40)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95507Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7945.1