Strain identifier
BacDive ID: 13887
Type strain: 
Species: Aromatoleum toluvorans
Strain Designation: Td21
Strain history: <- ATCC <- N. J. Palleroni; Td21
NCBI tax ID(s): 92002 (species)
version 8.1 (current version)
General
@ref: 5623
BacDive-ID: 13887
DSM-Number: 15124
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Aromatoleum toluvorans Td21 is an aerobe, mesophilic bacterium that was isolated from muck soil.
NCBI tax id
- NCBI tax id: 92002
- Matching level: species
strain history
- @ref: 5623
- history: <- ATCC <- N. J. Palleroni; Td21
doi: 10.13145/bacdive13887.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Aromatoleum
- species: Aromatoleum toluvorans
- full scientific name: Aromatoleum toluvorans (Song et al. 1999) Rabus et al. 2019
synonyms
- @ref: 20215
- synonym: Azoarcus toluvorans
@ref: 5623
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Aromatoleum
species: Aromatoleum toluvorans
full scientific name: Aromatoleum toluvorans (Song et al. 1999) Rabus et al. 2019
strain designation: Td21
type strain: yes
Morphology
multimedia
- @ref: 5623
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_15124.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 5623 | MEDIUM R2A FOR DENITRIFYING BACTERIA (DSMZ Medium 830b) | yes | https://mediadive.dsmz.de/medium/830b | Name: MEDIUM R2A FOR DENITRIFYING BACTERIA (DSMZ Medium 830b) Composition: KNO3 0.5 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l HCl 0.025 g/l FeCl2 x 4 H2O 0.015 g/l CoCl2 x 6 H2O 0.0019 g/l MnCl2 x 4 H2O 0.001 g/l ZnCl2 0.0007 g/l Na2MoO4 x 2 H2O 0.00036 g/l NiCl2 x 6 H2O 0.00024 g/l H3BO3 6e-05 g/l CuCl2 x 2 H2O 2e-05 g/l Distilled water |
| 5623 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 36039 | MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and Neisseria | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5623 | positive | growth | 30 | mesophilic |
| 36039 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 5623 | aerobe |
| 5623 | anaerobe |
Isolation, sampling and environmental information
isolation
- @ref: 5623
- sample type: muck soil
- geographic location: Michigan, Clinton County
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Safety information
risk assessment
- @ref: 5623
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5623
- description: Azoarcus toluvorans strain Td-21 16S ribosomal RNA gene, partial sequence
- accession: L33692
- length: 1457
- database: ena
- NCBI tax ID: 92002
Genome sequences
- @ref: 66792
- description: Aromatoleum toluvorans Td21
- accession: GCA_012910905
- assembly level: contig
- database: ncbi
- NCBI tax ID: 92002
GC content
- @ref: 5623
- GC-content: 68.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 89.503 | no |
| flagellated | yes | 72.963 | no |
| gram-positive | no | 99.256 | no |
| anaerobic | no | 94.685 | no |
| aerobic | no | 57.43 | no |
| halophile | no | 92.081 | no |
| spore-forming | no | 95.145 | no |
| glucose-util | no | 66.892 | no |
| thermophile | no | 97.778 | yes |
| glucose-ferment | no | 88.321 | no |
External links
@ref: 5623
culture collection no.: DSM 15124, ATCC 700604
straininfo link
- @ref: 83062
- straininfo: 44034
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5623 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15124) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15124 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 36039 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7218 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 83062 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID44034.1 | StrainInfo: A central database for resolving microbial strain identifiers |