Strain identifier

BacDive ID: 138867

Type strain: No

Species: Pseudomonas aeruginosa

Strain Designation: 13335/1955-224

Strain history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 13335/1955-224

NCBI tax ID(s): 287 (species)

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General

@ref: 40838

BacDive-ID: 138867

keywords: genome sequence, Bacteria, obligate aerobe, mesophilic, motile

description: Pseudomonas aeruginosa 13335/1955-224 is an obligate aerobe, mesophilic, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

strain history

  • @ref: 40838
  • history: CIP <- 1959, H. Kleinmaier, Hyg. Inst., Bonn, Germany: strain 13335/1955-224

doi: 10.13145/bacdive138867.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 40838

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

strain designation: 13335/1955-224

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes99.261
6948099.992negative
40838yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40838MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
40838CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
40838CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 40838
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 40838
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.97

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4083817632nitrate+reduction
4083816301nitrite+reduction

metabolite production

  • @ref: 40838
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
40838oxidase+
40838catalase+1.11.1.6
40838urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40838-++++++-+-++--------

Isolation, sampling and environmental information

isolation

  • @ref: 40838
  • sample type: Unknown source

Safety information

risk assessment

  • @ref: 40838
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas aeruginosa ATCC 33351GCA_001420245scaffoldncbi287
66792Pseudomonas aeruginosa strain ATCC 33351287.2001wgspatric287
66792Pseudomonas aeruginosa ATCC 333512703719348draftimg287

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes85.71no
gram-positiveno98.415no
anaerobicno98.593no
aerobicyes94.342no
halophileno91.691no
spore-formingno93.428no
thermophileno99.803yes
glucose-utilyes88.703no
motileyes89.105no
glucose-fermentno90.462no

External links

@ref: 40838

culture collection no.: CIP 59.36, ATCC 33351, NCTC 11443

straininfo link

  • @ref: 95503
  • straininfo: 7943

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40838Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.36Collection of Institut Pasteur (CIP 59.36)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95503Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7943.1