Strain identifier

BacDive ID: 138775

Type strain: Yes

Species: Actinomyces slackii

Strain Designation: Sh-134563

Strain history: CIP <- 1988, NCTC <- V.E. Dent: strain Sh-134563

NCBI tax ID(s): 52774 (species)

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General

@ref: 40535

BacDive-ID: 138775

keywords: genome sequence, Bacteria, anaerobe, mesophilic

description: Actinomyces slackii Sh-134563 is an anaerobe, mesophilic bacterium of the family Actinomycetaceae.

NCBI tax id

  • NCBI tax id: 52774
  • Matching level: species

strain history

  • @ref: 40535
  • history: CIP <- 1988, NCTC <- V.E. Dent: strain Sh-134563

doi: 10.13145/bacdive138775.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces slackii
  • full scientific name: Actinomyces slackii Dent and Williams 1986

@ref: 40535

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces slackii

strain designation: Sh-134563

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no93.652
69480100positive
40535nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40535MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
40535CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

  • @ref: 40535
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 91.125

spore formation

@refspore formationconfidence
69481no100
69480no99.99

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4053517632nitrate+reduction
4053516301nitrite-reduction

metabolite production

  • @ref: 40535
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
40535oxidase-
40535catalase-1.11.1.6
40535urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40535--++-++---+----++-+-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
40535BelfastUnited KingdomGBREurope
51191Cattle,dental plaque of dairy cattle
40535BelfastUnited KingdomGBREuropeAnimal, Cow, dental plaque1985

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Oral cavity and airways#Plaque

Safety information

risk assessment

  • @ref: 40535
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomyces slackii NCTC11923GCA_900637295completencbi52774
66792Actinomyces slackii strain NCTC1192352774.3completepatric52774

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno96.355no
gram-positiveyes96.239no
anaerobicno92.281no
aerobicno89.383no
halophileno91.683no
spore-formingno91.41no
thermophileno95.364yes
glucose-utilyes85.303no
motileno92.838no
glucose-fermentyes76.521no

External links

@ref: 40535

culture collection no.: CCUG 32792, CIP 103130, NCTC 11923

straininfo link

  • @ref: 95432
  • straininfo: 46131

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40535Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103130Collection of Institut Pasteur (CIP 103130)
51191Curators of the CCUGhttps://www.ccug.se/strain?id=32792Culture Collection University of Gothenburg (CCUG) (CCUG 32792)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95432Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46131.1