Strain identifier

BacDive ID: 138632

Type strain: Yes

Species: Carnimonas nigrificans

Strain Designation: CTCBS1

Strain history: CIP <- 1998, M. Garriga, IRTA, Monells, Spain: strain CTCBS1

NCBI tax ID(s): 64323 (species)

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General

@ref: 40215

BacDive-ID: 138632

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Carnimonas nigrificans CTCBS1 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Halomonadaceae.

NCBI tax id

  • NCBI tax id: 64323
  • Matching level: species

strain history

@refhistory
402151998, M. Garriga, IRTA, Monells, Spain: strain CTCBS1
40215CIP <- 1998, M. Garriga, IRTA, Monells, Spain: strain CTCBS1

doi: 10.13145/bacdive138632.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Carnimonas
  • species: Carnimonas nigrificans
  • full scientific name: Carnimonas nigrificans Garriga et al. 1998

@ref: 40215

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Carnimonas

species: Carnimonas nigrificans

strain designation: CTCBS1

type strain: yes

Morphology

cell morphology

  • @ref: 40215
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40215MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
40215CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
40215positivegrowth30mesophilic
40215positivegrowth25-30mesophilic
40215nogrowth5psychrophilic
40215nogrowth10psychrophilic
40215nogrowth37mesophilic
40215nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 40215
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 40215
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose+builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
40215citrate-carbon source16947
40215esculin+hydrolysis4853
40215nitrate-reduction17632
40215nitrite-reduction16301
40215nitrate-respiration17632

antibiotic resistance

  • @ref: 40215
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 40215
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 40215
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
40215oxidase+
40215beta-galactosidase+3.2.1.23
40215alcohol dehydrogenase-1.1.1.1
40215gelatinase-
40215amylase+
40215DNase-
40215caseinase-3.4.21.50
40215catalase+1.11.1.6
40215tween esterase-
40215lecithinase-
40215lipase-
40215lysine decarboxylase-4.1.1.18
40215ornithine decarboxylase-4.1.1.17
40215protease-
40215tryptophan deaminase-
40215urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
40215-++--+----++---++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
40215---+/-+/-+/----++++-------+/--++++-+/--++--------+--+------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
40215+---+++++-+---+-+++---+-----++++---+-------+---------+--++--+-+-+--------------+-----------+-------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
40215CataloniaSpainESPEurope
40215CataloniaSpainESPEuropeFood, Cured meat product1993

Safety information

risk assessment

  • @ref: 40215
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 40215

culture collection no.: CIP 105703, CECT 4437

straininfo link

  • @ref: 95313
  • straininfo: 60927

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9734022Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products.Garriga M, Ehrmann MA, Arnau J, Hugas M, Vogel RFInt J Syst Bacteriol10.1099/00207713-48-3-6771998Animals, Base Sequence, Gram-Negative Aerobic Rods and Cocci/*classification/genetics/physiology, Meat Products/*microbiology, Mice, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, Random Amplified Polymorphic DNA TechniqueGenetics
Phylogeny11411685Halomonas marisflavae sp. nov., a halophilic bacterium isolated from the Yellow Sea in Korea.Yoon JH, Choi SH, Lee KC, Kho YH, Kang KH, Park YHInt J Syst Evol Microbiol10.1099/00207713-51-3-11712001DNA, Ribosomal/genetics, Halomonas/*classification/genetics/isolation & purification/ultrastructure, Korea, Microscopy, Electron, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Ubiquinone/metabolismGenetics
Phylogeny17766858Halotalea alkalilenta gen. nov., sp. nov., a novel osmotolerant and alkalitolerant bacterium from alkaline olive mill wastes, and emended description of the family Halomonadaceae Franzmann et al. 1989, emend. Dobson and Franzmann 1996.Ntougias S, Zervakis GI, Fasseas CInt J Syst Evol Microbiol10.1099/ijs.0.65078-02007Aerobiosis/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Glucose/metabolism, Halomonadaceae/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Industrial Waste, Models, Molecular, Molecular Sequence Data, Nucleic Acid Conformation, Nucleic Acid Hybridization, Olea/*microbiology, Organic Chemicals/metabolism, Osmotic Pressure, Phylogeny, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolismMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
40215Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105703Collection of Institut Pasteur (CIP 105703)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
95313Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID60927.1