Strain identifier
BacDive ID: 13859
Type strain: 
Species: Litorimicrobium taeanense
Strain Designation: G4
Strain history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; G4
NCBI tax ID(s): 657014 (species)
version 8.1 (current version)
General
@ref: 16098
BacDive-ID: 13859
DSM-Number: 22007
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Litorimicrobium taeanense G4 is a mesophilic, Gram-negative bacterium that was isolated from beach sediment.
NCBI tax id
- NCBI tax id: 657014
- Matching level: species
strain history
- @ref: 16098
- history: <- C. O. Jeon, Chung-Ang Univ., Seoul, Republic of Korea; G4
doi: 10.13145/bacdive13859.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Litorimicrobium
- species: Litorimicrobium taeanense
- full scientific name: Litorimicrobium taeanense Jin et al. 2011
synonyms
@ref synonym 20215 Thalassovita taeanensis 20215 Thalassobius taeanensis
@ref: 16098
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Thalassobius
species: Thalassobius taeanensis
full scientific name: Thalassobius taeanensis (Jin et al. 2011) Hördt et al. 2020
strain designation: G4
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.997
Culture and growth conditions
culture medium
- @ref: 16098
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16098
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 16098
- sample type: beach sediment
- geographic location: Taean
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Coast |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_67209.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_29029;97_36604;98_47375;99_67209&stattab=map
- Last taxonomy: Litorimicrobium taeanense subclade
- 16S sequence: GQ232737
- Sequence Identity:
- Total samples: 1042
- soil counts: 19
- aquatic counts: 996
- animal counts: 24
- plant counts: 3
Safety information
risk assessment
- @ref: 16098
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16098
- description: Litorimicrobium taeanense strain G4 16S ribosomal RNA gene, partial sequence
- accession: GQ232737
- length: 1386
- database: ena
- NCBI tax ID: 657014
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Thalassovita taeanensis DSM 22007 | GCA_900110775 | scaffold | ncbi | 657014 |
| 66792 | Litorimicrobium taeanense strain DSM 22007 | 657014.3 | wgs | patric | 657014 |
| 66792 | Litorimicrobium taeanense DSM 22007 | 2615840713 | draft | img | 657014 |
GC content
- @ref: 16098
- GC-content: 62.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| glucose-ferment | no | 91.056 | no |
| motile | no | 58.367 | no |
| flagellated | no | 90.533 | no |
| gram-positive | no | 98.062 | no |
| anaerobic | no | 98.195 | no |
| aerobic | yes | 81.22 | no |
| halophile | yes | 63.134 | no |
| spore-forming | no | 96.48 | no |
| thermophile | no | 98.572 | yes |
| glucose-util | yes | 52.389 | no |
External links
@ref: 16098
culture collection no.: DSM 22007, KACC 13706
straininfo link
- @ref: 83035
- straininfo: 370336
literature
- topic: Phylogeny
- Pubmed-ID: 20639225
- title: Litorimicrobium taeanense gen. nov., sp. nov., isolated from a sandy beach.
- authors: Jin HM, Lee HJ, Kim JM, Park MS, Lee K, Jeon CO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.025007-0
- year: 2010
- mesh: Aerobiosis, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/physiology, Sequence Analysis, DNA, *Soil Microbiology, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16098 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22007) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22007 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83035 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID370336.1 | StrainInfo: A central database for resolving microbial strain identifiers |