Strain identifier

BacDive ID: 138523

Type strain: Yes

Species: Caldimonas manganoxidans

Strain history: M. Takeda strain HS.

NCBI tax ID(s): 196015 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 39908

BacDive-ID: 138523

keywords: thermophilic, Bacteria, 16S sequence, genome sequence

description: Caldimonas manganoxidans CIP 107619 is a thermophilic bacterium of the family Comamonadaceae.

NCBI tax id

  • NCBI tax id: 196015
  • Matching level: species

strain history: M. Takeda strain HS.

doi: 10.13145/bacdive138523.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Caldimonas
  • species: Caldimonas manganoxidans
  • full scientific name: Caldimonas manganoxidans Takeda et al. 2002

@ref: 39908

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Caldimonas

species: Caldimonas manganoxidans

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 39908
  • name: MEDIUM 328- for nutrient agar
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)

culture temp

@refgrowthtypetemperaturerange
39908positivegrowth45thermophilic
67770positivegrowth45thermophilic

Physiology and metabolism

compound production

  • @ref: 67770
  • compound: Thermostable poly(3-hydroxybutyrate) depolymerase

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
39908MatsueJapanJPNAsia
67770MatsueJapanJPNAsiaHot spring water

Sequence information

16S sequences

  • @ref: 67770
  • description: Caldimonas manganoxidans gene for 16S rRNA, partial sequence
  • accession: AB008801
  • length: 1466
  • database: ena
  • NCBI tax ID: 196015

Genome sequences

  • @ref: 67770
  • description: Caldimonas manganoxidans ATCC BAA-369, whole genome shotgun sequencing project
  • accession: ARLH00000000
  • database: ncbi
  • NCBI tax ID: 1265502

GC content

  • @ref: 67770
  • GC-content: 66.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 39908

culture collection no.: CIP 107619, JCM 10698, ATCC BAA 369, IFO 16448, NBRC 104253, NBRC 16448

straininfo link

@refpassport
20218http://www.straininfo.net/strains/336591
20218http://www.straininfo.net/strains/279038
20218http://www.straininfo.net/strains/302159
20218http://www.straininfo.net/strains/302161

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12054255Caldimonas manganoxidans gen. nov., sp. nov., a poly(3-hydroxybutyrate)-degrading, manganese-oxidizing thermophile.Takeda M, Kamagata Y, Ghiorse WC, Hanada S, Koizumi JIInt J Syst Evol Microbiol10.1099/00207713-52-3-8952002Bacterial Typing Techniques, Betaproteobacteria/chemistry/*classification/genetics/growth & development, DNA, Ribosomal/analysis, Fresh Water/*microbiology, *Hot Temperature, Hydroxybutyrates/*metabolism, Manganese/*metabolism, Molecular Sequence Data, Oxidation-Reduction, Phenotype, Phylogeny, Polyesters/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAMetabolism
Phylogeny24122117Caldimonas meghalayensis sp. nov., a novel thermophilic betaproteobacterium isolated from a hot spring of Meghalaya in northeast India.Rakshak K, Ravinder K, Nupur, Srinivas TN, Kumar PAAntonie Van Leeuwenhoek10.1007/s10482-013-0043-x2013Bacterial Typing Techniques, Base Composition, Cluster Analysis, Comamonadaceae/*classification/genetics/*isolation & purification/physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Hot Springs/*microbiology, India, Locomotion, Microscopy, Electron, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
39908Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5075 Collection of Institut Pasteur (CIP 107619)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/