Strain identifier

BacDive ID: 138451

Type strain: Yes

Species: Marinobacter litoralis

Strain Designation: SW-45

Strain history: CIP <- 2003, JCM <- 2002, KRIBB: strain SW-45

NCBI tax ID(s): 187981 (species)

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General

@ref: 39768

BacDive-ID: 138451

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Marinobacter litoralis SW-45 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Alteromonadaceae.

NCBI tax id

  • NCBI tax id: 187981
  • Matching level: species

strain history

@refhistory
67770Y.-H. Park SW-45.
39768CIP <- 2003, JCM <- 2002, KRIBB: strain SW-45

doi: 10.13145/bacdive138451.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter litoralis
  • full scientific name: Marinobacter litoralis Yoon et al. 2003

@ref: 39768

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter litoralis

strain designation: SW-45

type strain: yes

Morphology

cell morphology

  • @ref: 39768
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39768Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
39768CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
39768CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
39768positivegrowth30mesophilic
67770positivegrowth30mesophilic
39768positivegrowth22-37
39768nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39768
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
39768NaClpositivegrowth2-6 %
39768NaClnogrowth0 %
39768NaClnogrowth8 %
39768NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: Q-9

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
39768esculin-hydrolysis4853
39768nitrate-builds gas from17632
39768nitrate-reduction17632
39768nitrite-builds gas from16301
39768nitrite-reduction16301

metabolite production

  • @ref: 39768
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
39768oxidase+
39768beta-galactosidase-3.2.1.23
39768alcohol dehydrogenase-1.1.1.1
39768gelatinase-
39768amylase-
39768DNase-
39768caseinase-3.4.21.50
39768catalase+1.11.1.6
39768tween esterase-
39768gamma-glutamyltransferase+2.3.2.2
39768lecithinase-
39768lipase-
39768lysine decarboxylase-4.1.1.18
39768ornithine decarboxylase-4.1.1.17
39768phenylalanine ammonia-lyase-4.3.1.24
39768protease+
39768tryptophan deaminase-
39768urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39768-+-+-+-----+-----+--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39768-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic location
39768Republic of KoreaKORAsia
67770Seawater
39768Republic of KoreaKORAsiaEnvironment, Sea waterAt Jungdongjin beach on the East Sea

taxonmaps

  • @ref: 69479
  • File name: preview.99_14135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_2738;97_3366;98_10723;99_14135&stattab=map
  • Last taxonomy: Marinobacter litoralis subclade
  • 16S sequence: AF479689
  • Sequence Identity:
  • Total samples: 5519
  • soil counts: 334
  • aquatic counts: 4419
  • animal counts: 712
  • plant counts: 54

Safety information

risk assessment

  • @ref: 39768
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Marinobacter marinus strain SW-45 16S ribosomal RNA gene, partial sequence
  • accession: AF479689
  • length: 1496
  • database: ena
  • NCBI tax ID: 187981

GC content

  • @ref: 67770
  • GC-content: 55
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 39768

culture collection no.: CIP 108099, JCM 11547, KCCM 41591

straininfo link

  • @ref: 95175
  • straininfo: 100740

literature

  • topic: Phylogeny
  • Pubmed-ID: 12710627
  • title: Marinobacter litoralis sp. nov., a moderately halophilic bacterium isolated from sea water from the East Sea in Korea.
  • authors: Yoon JH, Shin DY, Kim IG, Kang KH, Park YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02363-0
  • year: 2003
  • mesh: Alteromonadaceae/*classification/genetics/isolation & purification/metabolism, Base Composition, DNA, Bacterial/analysis/chemistry/genetics, Fatty Acids/analysis, Korea, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Seawater/*microbiology, Temperature, Ubiquinone/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39768Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108099Collection of Institut Pasteur (CIP 108099)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
95175Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID100740.1