Strain identifier
BacDive ID: 138429
Type strain: 
Species: Salmonella enterica
Strain history: CIP <- 1955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi
NCBI tax ID(s): 28901 (species)
version 9.1 (current version)
General
@ref: 39715
BacDive-ID: 138429
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Salmonella enterica CIP 55.35 is a Gram-negative bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 28901
- Matching level: species
strain history
| @ref | history |
|---|---|
| 39715 | 1955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi |
| 39715 | CIP <- 1955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi |
doi: 10.13145/bacdive138429.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica
- full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
synonyms
@ref synonym 20215 Bacillus typhi 20215 Bacillus typhimurium 20215 Bacillus enteritidis 20215 Bacillus choleraesuis 20215 Salmonella typhi 20215 Salmonella choleraesuis 20215 Salmonella paratyphi 20215 Salmonella typhimurium 20215 Salmonella enteritidis
@ref: 39715
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 100 | ||
| 39715 | negative | rod-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 39715 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 39715 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
| 39715 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
- @ref: 39715
- growth: positive
- type: growth
- temperature: 30
Isolation, sampling and environmental information
isolation
| @ref | sampling date | sample type |
|---|---|---|
| 52927 | 1918 | |
| 39715 | Unknown source |
Safety information
risk assessment
- @ref: 39715
- biosafety level: 3
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 124043
- description: S.typhi gene for 16S ribosomal RNA
- accession: Z47544
- length: 1534
- database: nuccore
- NCBI tax ID: 90370
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Salmonella enterica subsp. enterica serovar Typhi NCTC8385 | GCA_900456745 | contig | ncbi | 90370 |
| 66792 | Salmonella enterica subsp. enterica serovar Typhi strain NCTC8385 | 90370.2450 | wgs | patric | 90370 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 100 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.002 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 76.557 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.032 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 76.05 | no |
External links
@ref: 39715
culture collection no.: CIP 55.35, ATCC 19430, NCTC 8385, CUETM 79.394, HAMBI 1306, CCUG 35699
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Pathogenicity | 6630471 | Lactose-fermenting, multiple drug-resistant Salmonella typhi strains isolated from a patient with postoperative typhoid fever. | Kohbata S, Takahashi M, Yabuuchi E | J Clin Microbiol | 10.1128/jcm.18.4.920-925.1983 | 1983 | Anti-Bacterial Agents, Drug Resistance, Microbial, Humans, Lactose/*metabolism, Male, Middle Aged, *Postoperative Complications, Salmonella typhi/classification/*metabolism, Serotyping, Typhoid Fever/etiology/*microbiology | Metabolism |
| 19651456 | Changes in membrane fatty acids and murein composition of Bacillus cereus and Salmonella Typhi induced by gamma irradiation treatment. | Ayari S, Dussault D, Millette M, Hamdi M, Lacroix M | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2009.07.012 | 2009 | Bacillus cereus/*radiation effects, Cell Membrane/chemistry/*radiation effects, Chromatography, Gas, Chromatography, High Pressure Liquid, Dose-Response Relationship, Radiation, Fatty Acids/analysis/radiation effects, *Food Irradiation, *Gamma Rays, Peptidoglycan/analysis/radiation effects, Salmonella typhi/*radiation effects | ||
| Pathogenicity | 23031266 | A study of antimicrobial activity, acute toxicity and cytoprotective effect of a polyherbal extract in a rat ethanol-HCl gastric ulcer model. | Haule EE, Moshi MJ, Nondo RS, Mwangomo DT, Mahunnah RL | BMC Res Notes | 10.1186/1756-0500-5-546 | 2012 | Animals, Anti-Infective Agents/*pharmacology/toxicity, Cell Survival/*drug effects, Crustacea/drug effects, Female, Gram-Negative Bacteria/drug effects, Male, Microbial Sensitivity Tests, Plant Extracts/*pharmacology/toxicity, Rats, Rats, Sprague-Dawley, Stomach Ulcer/*prevention & control | |
| Pathogenicity | 24552147 | Antimicrobial activity, acute toxicity and cytoprotective effect of Crassocephalum vitellinum (Benth.) S. Moore extract in a rat ethanol-HCl gastric ulcer model. | Moshi MJ, Nondo RS, Haule EE, Mahunnah RL, Kidukuli AW | BMC Res Notes | 10.1186/1756-0500-7-91 | 2014 | Acids/chemistry/toxicity, Animals, Anti-Infective Agents/*pharmacology, Artemia/drug effects/growth & development, Asteraceae/*chemistry, Ethanol/chemistry/toxicity, Female, Flavonoids/analysis, Gastric Mucosa/drug effects/pathology, Gram-Negative Bacteria/drug effects/growth & development, Larva/drug effects/growth & development, Male, Mice, Plant Components, Aerial/chemistry, Plant Extracts/chemistry/*pharmacology, Rats, Rats, Sprague-Dawley, Saponins/analysis, Stomach Ulcer/chemically induced/*prevention & control, Tannins/analysis, Terpenes/analysis, Toxicity Tests, Acute | |
| Pathogenicity | 24939681 | Use of TaqMan(R) real-time PCR for rapid detection of Salmonella enterica serovar Typhi. | Ranjbar R, Naghoni A, Farshad S, Lashini H, Najafi A, Sadeghifard N, Mammina C | Acta Microbiol Immunol Hung | 10.1556/AMicr.61.2014.2.3 | 2014 | Bacterial Typing Techniques/*methods/standards, DNA Primers/chemistry, *Genes, Bacterial, Humans, Real-Time Polymerase Chain Reaction/*methods/standards, Salmonella typhi/classification/*genetics/isolation & purification, Sensitivity and Specificity, Typhoid Fever/microbiology | Phylogeny |
| Phylogeny | 24994773 | Streptomyces pluripotens sp. nov., a bacteriocin-producing streptomycete that inhibits meticillin-resistant Staphylococcus aureus. | Lee LH, Zainal N, Azman AS, Eng SK, Ab Mutalib NS, Yin WF, Chan KG | Int J Syst Evol Microbiol | 10.1099/ijs.0.065045-0 | 2014 | *Antibiosis, Avicennia, Bacterial Typing Techniques, Bacteriocins/*biosynthesis, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Malaysia, Methicillin-Resistant Staphylococcus aureus, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolism, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Genetics | 26452302 | Genome sequence of Streptomyces pluripotens MUSC 135(T) exhibiting antibacterial and antioxidant activity. | Ser HL, Tan WS, Ab Mutalib NS, Cheng HJ, Yin WF, Chan KG, Lee LH | Mar Genomics | 10.1016/j.margen.2015.09.010 | 2015 | Aeromonas hydrophila/drug effects, Anti-Bacterial Agents/metabolism/*pharmacology, Antioxidants/metabolism/*pharmacology, Gene Expression Regulation, Bacterial/*physiology, *Genome, Bacterial, Methicillin-Resistant Staphylococcus aureus/drug effects, Salmonella typhi/drug effects, Streptomyces/genetics | Pathogenicity |
| Phylogeny | 30532629 | Identification and characterization of a novel antimicrobial peptide compound produced by Bacillus megaterium strain isolated from oral microflora. | Al-Thubiani ASA, Maher YA, Fathi A, Abourehab MAS, Alarjah M, Khan MSA, Al-Ghamdi SB | Saudi Pharm J | 10.1016/j.jsps.2018.05.019 | 2018 | ||
| Pathogenicity | 30721090 | Lawsonia inermis L. leaves aqueous extract as a natural antioxidant and antibacterial product. | Pasandi Pour A, Farahbakhsh H | Nat Prod Res | 10.1080/14786419.2019.1569006 | 2019 | Anti-Bacterial Agents/chemistry/*pharmacology, Antioxidants/administration & dosage/chemistry/*pharmacology, Dose-Response Relationship, Drug, Drug Evaluation, Preclinical, Ecotype, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Lawsonia Plant/*chemistry, Microbial Sensitivity Tests, Naphthoquinones/analysis, Plant Extracts/chemistry, Plant Leaves/chemistry | |
| Phylogeny | 31028863 | Antioxidant, antibacterial, and anti-adhesive activities of biosurfactants isolated from Bacillus strains. | Giri SS, Ryu EC, Sukumaran V, Park SC | Microb Pathog | 10.1016/j.micpath.2019.04.035 | 2019 | Anti-Bacterial Agents/isolation & purification/*pharmacology, Antioxidants/isolation & purification/*pharmacology, Bacillus licheniformis/*metabolism, Bacillus subtilis/*metabolism, Bacterial Adhesion/*drug effects, Biofilms/*drug effects, Biphenyl Compounds/isolation & purification, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Hydrogen-Ion Concentration, Hydroxyl Radical/isolation & purification, Picrates/isolation & purification, Surface-Active Agents/isolation & purification/*pharmacology, Temperature | Enzymology |
| 32128281 | Antimicrobial activities of Tephrosia vogelii against selected pathogenic fungi and bacteria strains. | Mlozi SH, Mmongoyo JA, Chacha M | Mycology | 10.1080/21501203.2019.1705929 | 2019 | |||
| Pathogenicity | 32417543 | Drug repurposing approach to target FtsZ cell division protein from Salmonella Typhi. | Naz F, Mashkoor M, Sharma P, Haque MA, Kapil A, Kumar M, Kaur P, Abdul Samath E | Int J Biol Macromol | 10.1016/j.ijbiomac.2020.05.063 | 2020 | Anti-Bacterial Agents/chemistry/*pharmacology, Bacterial Proteins/*antagonists & inhibitors/chemistry/metabolism, Benzethonium/chemistry/*pharmacology, Binding Sites, Cytoskeletal Proteins/*antagonists & inhibitors/chemistry/metabolism, Enzyme Inhibitors/chemistry/*pharmacology, Molecular Docking Simulation, Protein Binding, Protein Conformation, alpha-Helical, Salmonella typhi/*drug effects/enzymology | Metabolism |
| Enzymology | 32658364 | Antibacterial Flavonoids and Other Compounds from the Aerial Parts of Vernonia guineensis Benth. (Asteraceae). | Collins Njonte Wouamba S, Mouthe Happi G, Nguiam Pouofo M, Tchamgoue J, Jouda JB, Longo F, Ndjakou Lenta B, Sewald N, Fogue Kouam S | Chem Biodivers | 10.1002/cbdv.202000296 | 2020 | Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Dose-Response Relationship, Drug, Escherichia coli/drug effects, Flavonoids/chemistry/isolation & purification/*pharmacology, Microbial Sensitivity Tests, Molecular Structure, Plant Extracts/chemistry/isolation & purification/*pharmacology, Salmonella/drug effects, Shigella/drug effects, Structure-Activity Relationship, Vernonia/*chemistry | Phylogeny |
| Pathogenicity | 32694956 | Screening of the Dichloromethane: Methanolic Extract of Centella asiatica for Antibacterial Activities against Salmonella typhi, Escherichia coli, Shigella sonnei, Bacillus subtilis, and Staphylococcus aureus. | Sieberi BM, Omwenga GI, Wambua RK, Samoei JC, Ngugi MP | ScientificWorldJournal | 10.1155/2020/6378712 | 2020 | Anti-Bacterial Agents/isolation & purification/*pharmacology, Bacillus subtilis/drug effects/physiology, Bacteria/classification/*drug effects, Bacterial Infections/*drug therapy/microbiology, Centella/*chemistry, Escherichia coli/drug effects/physiology, Host-Pathogen Interactions/drug effects, Humans, Kenya, Methanol/chemistry, Methylene Chloride/isolation & purification/*pharmacology, Microbial Sensitivity Tests/methods, Phytochemicals/isolation & purification/pharmacology, Phytotherapy/methods, Plant Extracts/pharmacology, Salmonella typhi/drug effects/physiology, Shigella sonnei/drug effects/physiology, Staphylococcus aureus/drug effects/physiology, Triterpenes/*pharmacology | Phylogeny |
| 33807402 | Antimicrobial Activity of Selected Medicinal Plants from a Sub-Saharan African Country against Bacterial Pathogens from Post-Operative Wound Infections. | Owusu E, Ahorlu MM, Afutu E, Akumwena A, Asare GA | Med Sci (Basel) | 10.3390/medsci9020023 | 2021 | Africa South of the Sahara, Anti-Bacterial Agents/pharmacology, Bacteria, Escherichia coli, *Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, Phytochemicals, *Plants, Medicinal, Pseudomonas aeruginosa, Staphylococcus aureus, *Wound Infection |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 39715 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.35 | Collection of Institut Pasteur (CIP 55.35) | |
| 52927 | Curators of the CCUG | https://www.ccug.se/strain?id=35699 | Culture Collection University of Gothenburg (CCUG) (CCUG 35699) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 124043 | Dr. Isabel Schober, Dr. Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy |