Strain identifier

BacDive ID: 138429

Type strain: No

Species: Salmonella enterica

Strain history: CIP <- 1955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi

NCBI tax ID(s): 28901 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 39715

BacDive-ID: 138429

keywords: genome sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Salmonella enterica CIP 55.35 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 28901
  • Matching level: species

strain history

@refhistory
397151955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi
39715CIP <- 1955, A. Felix, PHLS, London, UK: strain Ty 2, 59 Felix, Salmonella typhi

doi: 10.13145/bacdive138429.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987
  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 39715

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

type strain: no

Morphology

cell morphology

  • @ref: 39715
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39715MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
39715CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
39715CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 39715
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

@refsampling datesample type
529271918
39715Unknown source

Safety information

risk assessment

  • @ref: 39715
  • biosafety level: 3
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. enterica serovar Typhi NCTC8385GCA_900456745contigncbi90370
66792Salmonella enterica subsp. enterica serovar Typhi strain NCTC838590370.2450wgspatric90370

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.227no
flagellatedyes51.436no
gram-positiveno98.597no
anaerobicno91.604no
halophileno93.719no
spore-formingno93.766no
thermophileno98.618no
glucose-utilyes92.763no
aerobicyes69.576no
glucose-fermentyes93.888no

External links

@ref: 39715

culture collection no.: CIP 55.35, ATCC 19430, NCTC 8385, CUETM 79.394, HAMBI 1306, CCUG 35699

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity6630471Lactose-fermenting, multiple drug-resistant Salmonella typhi strains isolated from a patient with postoperative typhoid fever.Kohbata S, Takahashi M, Yabuuchi EJ Clin Microbiol10.1128/jcm.18.4.920-925.19831983Anti-Bacterial Agents, Drug Resistance, Microbial, Humans, Lactose/*metabolism, Male, Middle Aged, *Postoperative Complications, Salmonella typhi/classification/*metabolism, Serotyping, Typhoid Fever/etiology/*microbiologyMetabolism
19651456Changes in membrane fatty acids and murein composition of Bacillus cereus and Salmonella Typhi induced by gamma irradiation treatment.Ayari S, Dussault D, Millette M, Hamdi M, Lacroix MInt J Food Microbiol10.1016/j.ijfoodmicro.2009.07.0122009Bacillus cereus/*radiation effects, Cell Membrane/chemistry/*radiation effects, Chromatography, Gas, Chromatography, High Pressure Liquid, Dose-Response Relationship, Radiation, Fatty Acids/analysis/radiation effects, *Food Irradiation, *Gamma Rays, Peptidoglycan/analysis/radiation effects, Salmonella typhi/*radiation effects
Pathogenicity23031266A study of antimicrobial activity, acute toxicity and cytoprotective effect of a polyherbal extract in a rat ethanol-HCl gastric ulcer model.Haule EE, Moshi MJ, Nondo RS, Mwangomo DT, Mahunnah RLBMC Res Notes10.1186/1756-0500-5-5462012Animals, Anti-Infective Agents/*pharmacology/toxicity, Cell Survival/*drug effects, Crustacea/drug effects, Female, Gram-Negative Bacteria/drug effects, Male, Microbial Sensitivity Tests, Plant Extracts/*pharmacology/toxicity, Rats, Rats, Sprague-Dawley, Stomach Ulcer/*prevention & control
Pathogenicity24552147Antimicrobial activity, acute toxicity and cytoprotective effect of Crassocephalum vitellinum (Benth.) S. Moore extract in a rat ethanol-HCl gastric ulcer model.Moshi MJ, Nondo RS, Haule EE, Mahunnah RL, Kidukuli AWBMC Res Notes10.1186/1756-0500-7-912014Acids/chemistry/toxicity, Animals, Anti-Infective Agents/*pharmacology, Artemia/drug effects/growth & development, Asteraceae/*chemistry, Ethanol/chemistry/toxicity, Female, Flavonoids/analysis, Gastric Mucosa/drug effects/pathology, Gram-Negative Bacteria/drug effects/growth & development, Larva/drug effects/growth & development, Male, Mice, Plant Components, Aerial/chemistry, Plant Extracts/chemistry/*pharmacology, Rats, Rats, Sprague-Dawley, Saponins/analysis, Stomach Ulcer/chemically induced/*prevention & control, Tannins/analysis, Terpenes/analysis, Toxicity Tests, Acute
Pathogenicity24939681Use of TaqMan(R) real-time PCR for rapid detection of Salmonella enterica serovar Typhi.Ranjbar R, Naghoni A, Farshad S, Lashini H, Najafi A, Sadeghifard N, Mammina CActa Microbiol Immunol Hung10.1556/AMicr.61.2014.2.32014Bacterial Typing Techniques/*methods/standards, DNA Primers/chemistry, *Genes, Bacterial, Humans, Real-Time Polymerase Chain Reaction/*methods/standards, Salmonella typhi/classification/*genetics/isolation & purification, Sensitivity and Specificity, Typhoid Fever/microbiologyPhylogeny
Phylogeny24994773Streptomyces pluripotens sp. nov., a bacteriocin-producing streptomycete that inhibits meticillin-resistant Staphylococcus aureus.Lee LH, Zainal N, Azman AS, Eng SK, Ab Mutalib NS, Yin WF, Chan KGInt J Syst Evol Microbiol10.1099/ijs.0.065045-02014*Antibiosis, Avicennia, Bacterial Typing Techniques, Bacteriocins/*biosynthesis, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Malaysia, Methicillin-Resistant Staphylococcus aureus, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification/*metabolism, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics26452302Genome sequence of Streptomyces pluripotens MUSC 135(T) exhibiting antibacterial and antioxidant activity.Ser HL, Tan WS, Ab Mutalib NS, Cheng HJ, Yin WF, Chan KG, Lee LHMar Genomics10.1016/j.margen.2015.09.0102015Aeromonas hydrophila/drug effects, Anti-Bacterial Agents/metabolism/*pharmacology, Antioxidants/metabolism/*pharmacology, Gene Expression Regulation, Bacterial/*physiology, *Genome, Bacterial, Methicillin-Resistant Staphylococcus aureus/drug effects, Salmonella typhi/drug effects, Streptomyces/geneticsPathogenicity
Phylogeny30532629Identification and characterization of a novel antimicrobial peptide compound produced by Bacillus megaterium strain isolated from oral microflora.Al-Thubiani ASA, Maher YA, Fathi A, Abourehab MAS, Alarjah M, Khan MSA, Al-Ghamdi SBSaudi Pharm J10.1016/j.jsps.2018.05.0192018
Pathogenicity30721090Lawsonia inermis L. leaves aqueous extract as a natural antioxidant and antibacterial product.Pasandi Pour A, Farahbakhsh HNat Prod Res10.1080/14786419.2019.15690062019Anti-Bacterial Agents/chemistry/*pharmacology, Antioxidants/administration & dosage/chemistry/*pharmacology, Dose-Response Relationship, Drug, Drug Evaluation, Preclinical, Ecotype, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Lawsonia Plant/*chemistry, Microbial Sensitivity Tests, Naphthoquinones/analysis, Plant Extracts/chemistry, Plant Leaves/chemistry
Phylogeny31028863Antioxidant, antibacterial, and anti-adhesive activities of biosurfactants isolated from Bacillus strains.Giri SS, Ryu EC, Sukumaran V, Park SCMicrob Pathog10.1016/j.micpath.2019.04.0352019Anti-Bacterial Agents/isolation & purification/*pharmacology, Antioxidants/isolation & purification/*pharmacology, Bacillus licheniformis/*metabolism, Bacillus subtilis/*metabolism, Bacterial Adhesion/*drug effects, Biofilms/*drug effects, Biphenyl Compounds/isolation & purification, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Hydrogen-Ion Concentration, Hydroxyl Radical/isolation & purification, Picrates/isolation & purification, Surface-Active Agents/isolation & purification/*pharmacology, TemperatureEnzymology
32128281Antimicrobial activities of Tephrosia vogelii against selected pathogenic fungi and bacteria strains.Mlozi SH, Mmongoyo JA, Chacha MMycology10.1080/21501203.2019.17059292019
Pathogenicity32417543Drug repurposing approach to target FtsZ cell division protein from Salmonella Typhi.Naz F, Mashkoor M, Sharma P, Haque MA, Kapil A, Kumar M, Kaur P, Abdul Samath EInt J Biol Macromol10.1016/j.ijbiomac.2020.05.0632020Anti-Bacterial Agents/chemistry/*pharmacology, Bacterial Proteins/*antagonists & inhibitors/chemistry/metabolism, Benzethonium/chemistry/*pharmacology, Binding Sites, Cytoskeletal Proteins/*antagonists & inhibitors/chemistry/metabolism, Enzyme Inhibitors/chemistry/*pharmacology, Molecular Docking Simulation, Protein Binding, Protein Conformation, alpha-Helical, Salmonella typhi/*drug effects/enzymologyMetabolism
Enzymology32658364Antibacterial Flavonoids and Other Compounds from the Aerial Parts of Vernonia guineensis Benth. (Asteraceae).Collins Njonte Wouamba S, Mouthe Happi G, Nguiam Pouofo M, Tchamgoue J, Jouda JB, Longo F, Ndjakou Lenta B, Sewald N, Fogue Kouam SChem Biodivers10.1002/cbdv.2020002962020Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Dose-Response Relationship, Drug, Escherichia coli/drug effects, Flavonoids/chemistry/isolation & purification/*pharmacology, Microbial Sensitivity Tests, Molecular Structure, Plant Extracts/chemistry/isolation & purification/*pharmacology, Salmonella/drug effects, Shigella/drug effects, Structure-Activity Relationship, Vernonia/*chemistryPhylogeny
Pathogenicity32694956Screening of the Dichloromethane: Methanolic Extract of Centella asiatica for Antibacterial Activities against Salmonella typhi, Escherichia coli, Shigella sonnei, Bacillus subtilis, and Staphylococcus aureus.Sieberi BM, Omwenga GI, Wambua RK, Samoei JC, Ngugi MPScientificWorldJournal10.1155/2020/63787122020Anti-Bacterial Agents/isolation & purification/*pharmacology, Bacillus subtilis/drug effects/physiology, Bacteria/classification/*drug effects, Bacterial Infections/*drug therapy/microbiology, Centella/*chemistry, Escherichia coli/drug effects/physiology, Host-Pathogen Interactions/drug effects, Humans, Kenya, Methanol/chemistry, Methylene Chloride/isolation & purification/*pharmacology, Microbial Sensitivity Tests/methods, Phytochemicals/isolation & purification/pharmacology, Phytotherapy/methods, Plant Extracts/pharmacology, Salmonella typhi/drug effects/physiology, Shigella sonnei/drug effects/physiology, Staphylococcus aureus/drug effects/physiology, Triterpenes/*pharmacologyPhylogeny
33807402Antimicrobial Activity of Selected Medicinal Plants from a Sub-Saharan African Country against Bacterial Pathogens from Post-Operative Wound Infections.Owusu E, Ahorlu MM, Afutu E, Akumwena A, Asare GAMed Sci (Basel)10.3390/medsci90200232021Africa South of the Sahara, Anti-Bacterial Agents/pharmacology, Bacteria, Escherichia coli, *Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, Phytochemicals, *Plants, Medicinal, Pseudomonas aeruginosa, Staphylococcus aureus, *Wound Infection

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39715Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2055.35Collection of Institut Pasteur (CIP 55.35)
52927Curators of the CCUGhttps://www.ccug.se/strain?id=35699Culture Collection University of Gothenburg (CCUG) (CCUG 35699)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes