Strain identifier

BacDive ID: 138346

Type strain: No

Species: Chitinophaga sancti

Strain Designation: MIC

Strain history: CIP <- 2000, NCIMB <- R.A. Lewin <- J.G. Holt: strain MIC

NCBI tax ID(s): 1004 (species)

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General

@ref: 39512

BacDive-ID: 138346

keywords: Bacteria, obligate aerobe, Gram-negative, rod-shaped

description: Chitinophaga sancti MIC is an obligate aerobe, Gram-negative, rod-shaped bacterium of the family Chitinophagaceae.

NCBI tax id

  • NCBI tax id: 1004
  • Matching level: species

strain history

  • @ref: 39512
  • history: CIP <- 2000, NCIMB <- R.A. Lewin <- J.G. Holt: strain MIC

doi: 10.13145/bacdive138346.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Chitinophaga
  • species: Chitinophaga sancti
  • full scientific name: Chitinophaga sancti (Lewin 1969) Kämpfer et al. 2006

  • synonyms

    • @ref: 20215
    • synonym: Flexibacter sancti

@ref: 39512

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Chitinophagales

family: Chitinophagaceae

genus: Chitinophaga

species: Chitinophaga sancti

strain designation: MIC

type strain: no

Morphology

cell morphology

  • @ref: 39512
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 39512

pigmentation

  • @ref: 39512
  • production: yes
  • name: Flexirubin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39512MEDIUM 33 - For Flexibacter flexilis and Flexibacter elegansyesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.100 g);Calcium chloride dihydrate (0.100 g);Glucose (1.000 g);Potassium nitrate (0.100 g);Casamino acids (1.000 g);Sodium glycerophosphate hexahydrate (0.100 g);Trizma hydrochlori
39512CIP Medium 33yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=33

culture temp

@refgrowthtypetemperature
39512positivegrowth25
39512positivegrowth15-37
39512nogrowth5
39512nogrowth41
39512nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 39512
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
39512NaClpositivegrowth0 %
39512NaClnogrowth2 %
39512NaClnogrowth4 %
39512NaClnogrowth6 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
395124853esculin+hydrolysis
39512606565hippurate-hydrolysis
3951217632nitrate-reduction
3951216301nitrite-reduction
3951215792malonate-assimilation
3951217632nitrate-respiration

metabolite production

  • @ref: 39512
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3951215688acetoin-
3951217234glucose-

enzymes

@refvalueactivityec
39512oxidase-
39512beta-galactosidase+3.2.1.23
39512alcohol dehydrogenase-1.1.1.1
39512gelatinase+
39512amylase-
39512DNase-
39512caseinase+3.4.21.50
39512catalase+1.11.1.6
39512tween esterase-
39512gamma-glutamyltransferase-2.3.2.2
39512lecithinase-
39512lipase-
39512lysine decarboxylase-4.1.1.18
39512ornithine decarboxylase-4.1.1.17
39512phenylalanine ammonia-lyase-4.3.1.24
39512protease+
39512tryptophan deaminase-
39512urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39512-+---++-+-++-+-+++-+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39512+-+++----+++---++++-+--------------------+-----------------+--------------------------+------------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample type
39512Ames, IowaUSAUSANorth America
39512Ames, IowaUnited States of AmericaUSANorth AmericaEnvironment, Soil in feed lot

Safety information

risk assessment

  • @ref: 39512
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39512

culture collection no.: CIP 106409, ATCC 23097, NCIMB 1384

straininfo link

  • @ref: 95101
  • straininfo: 37900

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39512Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106409Collection of Institut Pasteur (CIP 106409)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
95101Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID37900.1