Strain identifier

BacDive ID: 138264

Type strain: No

Species: Mesorhizobium amorphae

Strain Designation: SH 190012

Strain history: CIP <- 1999, E. Wang, Mexico Univ., Cuernavaca, Mexico: strain SH 190012 <- CCBAU

NCBI tax ID(s): 71433 (species)

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General

@ref: 39386

BacDive-ID: 138264

keywords: Bacteria, Gram-negative, rod-shaped

description: Mesorhizobium amorphae SH 190012 is a Gram-negative, rod-shaped bacterium of the family Phyllobacteriaceae.

NCBI tax id

  • NCBI tax id: 71433
  • Matching level: species

strain history

  • @ref: 39386
  • history: CIP <- 1999, E. Wang, Mexico Univ., Cuernavaca, Mexico: strain SH 190012 <- CCBAU

doi: 10.13145/bacdive138264.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Mesorhizobium
  • species: Mesorhizobium amorphae
  • full scientific name: Mesorhizobium amorphae Wang et al. 1999

@ref: 39386

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Phyllobacteriaceae

genus: Mesorhizobium

species: Mesorhizobium amorphae

strain designation: SH 190012

type strain: no

Morphology

cell morphology

  • @ref: 39386
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39386MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffiiyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
39386CIP Medium 1yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1

culture temp

@refgrowthtypetemperature
39386positivegrowth30
39386positivegrowth25-30
39386nogrowth10
39386nogrowth37
39386nogrowth41
39386nogrowth45

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
39386NaClpositivegrowth0 %
39386NaClnogrowth2 %
39386NaClnogrowth4 %
39386NaClnogrowth6 %
39386NaClnogrowth8 %
39386NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371D-fucose+builds acid from28847
68371D-lyxose+builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371erythritol+builds acid from17113
39386esculin-hydrolysis4853
39386hippurate-hydrolysis606565
39386nitrate-reduction17632
39386nitrite-reduction16301
39386nitrate-respiration17632

antibiotic resistance

  • @ref: 39386
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 39386
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3938615688acetoin-
3938617234glucose-

enzymes

@refvalueactivityec
39386oxidase-
39386beta-galactosidase+3.2.1.23
39386alcohol dehydrogenase-1.1.1.1
39386gelatinase-
39386amylase-
39386DNase-
39386caseinase-3.4.21.50
39386catalase-1.11.1.6
39386tween esterase-
39386gamma-glutamyltransferase+2.3.2.2
39386lecithinase-
39386lipase-
39386lysine decarboxylase-4.1.1.18
39386ornithine decarboxylase-4.1.1.17
39386phenylalanine ammonia-lyase-4.3.1.24
39386protease-
39386tryptophan deaminase-
39386urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39386-++--++++-++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39386+/-++/-+++/-+/-+/--+++--+/---+/-+/-------------+/---------++/-++/-+/-+/----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39386+++++-++--++--+++--+++-++-+----+++--+--++-------++------------+-+-----++-------++-----+----+-------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39386ShaanxiChinaCHNAsia
39386ShaanxiChinaCHNAsiaAmorpha fructicosa, nodule1993

Safety information

risk assessment

  • @ref: 39386
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39386

culture collection no.: CIP 105911

straininfo link

  • @ref: 95021
  • straininfo: 144566

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39386Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105911Collection of Institut Pasteur (CIP 105911)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
95021Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID144566.1