Strain identifier

BacDive ID: 138189

Type strain: No

Species: Vibrio pectenicida

Strain Designation: A496

Strain history: CIP <- 1997, C. Lambert, IFREMER, Brest, France: strain A496

NCBI tax ID(s): 62763 (species)

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General

@ref: 39234

BacDive-ID: 138189

keywords: Bacteria, facultative anaerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Vibrio pectenicida A496 is a facultative anaerobe, psychrophilic, Gram-negative bacterium of the family Vibrionaceae.

NCBI tax id

  • NCBI tax id: 62763
  • Matching level: species

strain history

@refhistory
392341997, C. Lambert, IFREMER, Brest, France: strain A496
39234CIP <- 1997, C. Lambert, IFREMER, Brest, France: strain A496

doi: 10.13145/bacdive138189.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio pectenicida
  • full scientific name: Vibrio pectenicida Lambert et al. 1998

@ref: 39234

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio pectenicida

strain designation: A496

type strain: no

Morphology

cell morphology

  • @ref: 39234
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39234Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
39234CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
39234positivegrowth15psychrophilic
39234positivegrowth5-30
39234nogrowth37mesophilic
39234nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 39234
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
39234NaClpositivegrowth2-6 %
39234NaClnogrowth0 %
39234NaClnogrowth8 %
39234NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3923417632nitrate+reduction
3923416301nitrite-reduction
3923417632nitrate+respiration

antibiotic resistance

  • @ref: 39234
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 39234
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
39234oxidase+
39234beta-galactosidase-3.2.1.23
39234alcohol dehydrogenase-1.1.1.1
39234gelatinase+/-
39234amylase+
39234caseinase+3.4.21.50
39234catalase+1.11.1.6
39234gamma-glutamyltransferase+2.3.2.2
39234lecithinase-
39234lipase-
39234lysine decarboxylase-4.1.1.18
39234ornithine decarboxylase-4.1.1.17
39234phenylalanine ammonia-lyase-4.3.1.24
39234tryptophan deaminase-
39234urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39234-+++-+--+-++-----+--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
39234BrestFranceFRAEurope
39234BrestFranceFRAEuropeAnimal, Larvae, Scallop Pecten maximus1991

Safety information

risk assessment

  • @ref: 39234
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39234

culture collection no.: CIP 105229

straininfo link

  • @ref: 94969
  • straininfo: 70625

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39234Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105229Collection of Institut Pasteur (CIP 105229)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
94969Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID70625.1