Strain identifier

BacDive ID: 138184

Type strain: No

Species: Serratia nematodiphila

Strain Designation: S3255

Strain history: CIP <- 1997, H.M. Aucken, PHLS, London, UK: strain S3255

NCBI tax ID(s): 458197 (species)

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General

@ref: 39219

BacDive-ID: 138184

keywords: Bacteria, facultative anaerobe, Gram-negative, rod-shaped

description: Serratia nematodiphila S3255 is a facultative anaerobe, Gram-negative, rod-shaped bacterium of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 458197
  • Matching level: species

strain history

@refhistory
392191997, H.M. Aucken, PHLS, London, UK: strain S3255
39219CIP <- 1997, H.M. Aucken, PHLS, London, UK: strain S3255

doi: 10.13145/bacdive138184.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia nematodiphila
  • full scientific name: Serratia nematodiphila Zhang et al. 2009

@ref: 39219

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia nematodiphila

strain designation: S3255

type strain: no

Morphology

cell morphology

  • @ref: 39219
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
39219MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
39219CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
39219CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
39219positivegrowth30
39219positivegrowth5-41

Physiology and metabolism

oxygen tolerance

  • @ref: 39219
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol+builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose+builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol+builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371glycerol+builds acid from17754
39219mannitol+fermentation29864
39219citrate+carbon source16947
39219glucose+fermentation17234
39219lactose+fermentation17716
39219nitrate+reduction17632
39219nitrite-reduction16301
39219malonate-assimilation15792
39219sodium thiosulfate-builds gas from132112
39219glucose+degradation17234

antibiotic resistance

  • @ref: 39219
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 39219
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3921915688acetoin+
3921917234glucose-

enzymes

@refvalueactivityec
39219oxidase-
39219beta-galactosidase+3.2.1.23
39219alcohol dehydrogenase-1.1.1.1
39219gelatinase+
39219catalase+1.11.1.6
39219lysine decarboxylase+4.1.1.18
39219ornithine decarboxylase+4.1.1.17
39219phenylalanine ammonia-lyase-4.3.1.24
39219tryptophan deaminase-
39219urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
39219-+++++--+-++-+-+++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
39219++/---+--+-++++---+++--+-+++-+--++-----+--+----++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
39219+++-+--+-+++---+-+++----+--++--++---++-++------+++++-++++++++++----+----++-++++++-+---+--++++++----

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrysample typegeographic locationcontinentisolation date
39219British MidlandsGBR
39219United KingdomGBRHuman, UrineBritish MidlandsEurope1985

Safety information

risk assessment

  • @ref: 39219
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 39219

culture collection no.: CIP 105187

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
39219Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105187Collection of Institut Pasteur (CIP 105187)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym