Strain identifier
BacDive ID: 13812
Type strain: 
Species: Cereibacter sphaeroides
Strain history: CIP <- 1960, C.B. Van Niel, Hopkins Marine Station, California, USA: strain ATH 2.4.1., Rhodopseudomonas sphaeroides
NCBI tax ID(s): 1063 (species)
version 8.1 (current version)
General
@ref: 2125
BacDive-ID: 13812
DSM-Number: 158
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Cereibacter sphaeroides DSM 158 is an anaerobe, mesophilic, Gram-negative bacterium of the family Paracoccaceae.
NCBI tax id
- NCBI tax id: 1063
- Matching level: species
strain history
| @ref | history |
|---|---|
| 2125 | <- ATCC <- C.B. van Niel, ATH 2.4.1 |
| 36213 | 1960, C.B. van Niel, Hopkins Marine Stat., California, USA: strain ATH 2.4.1., Rhodopseudomonas sphaeroides |
| 67770 | IFO 12203 <-- NCIB 8253 <-- S. R. Elsden <-- C. B. van Niel ATH 2.4.1. |
| 123254 | CIP <- 1960, C.B. Van Niel, Hopkins Marine Station, California, USA: strain ATH 2.4.1., Rhodopseudomonas sphaeroides |
doi: 10.13145/bacdive13812.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Cereibacter
- species: Cereibacter sphaeroides
- full scientific name: Cereibacter sphaeroides (van Niel 1944) Hördt et al. 2020
synonyms
@ref synonym 20215 Luteovulum sphaeroides 20215 Rhodopseudomonas sphaeroides 20215 Rhodobacter sphaeroides
@ref: 2125
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Cereibacter
species: Cereibacter sphaeroides
full scientific name: Cereibacter sphaeroides (van Niel 1944) Hördt et al. 2020
type strain: yes
Morphology
cell morphology
- @ref: 123254
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 50618
- incubation period: 3 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 2125 | RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) | yes | https://mediadive.dsmz.de/medium/27 | Name: RHODOSPIRILLACEAE MEDIUM (modified) (DSMZ Medium 27) Composition: Disodium succinate 1.0 g/l KH2PO4 0.5 g/l Ammonium acetate 0.5 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l MgSO4 x 7 H2O 0.4 g/l Yeast extract 0.3 g/l L-Cysteine HCl 0.3 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water |
| 36213 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 123254 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 | |
| 123254 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
| 123254 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 2125 | positive | growth | 25 | mesophilic |
| 36213 | positive | growth | 30 | mesophilic |
| 50618 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 2125 | anaerobe |
| 50618 | anaerobe |
compound production
| @ref | compound |
|---|---|
| 2125 | carotenoids |
| 2125 | ubiquinone-10 |
| 2125 | hydrogen |
observation
- @ref: 67770
- observation: quinones: Q-10
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68382 | alkaline phosphatase | - | 3.1.3.1 |
| 68382 | esterase (C 4) | - | |
| 68382 | esterase lipase (C 8) | - | |
| 68382 | lipase (C 14) | - | |
| 68382 | leucine arylamidase | - | 3.4.11.1 |
| 68382 | valine arylamidase | - | |
| 68382 | cystine arylamidase | - | 3.4.11.3 |
| 68382 | trypsin | - | 3.4.21.4 |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 |
| 68382 | acid phosphatase | - | 3.1.3.2 |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | |
| 68382 | alpha-galactosidase | - | 3.2.1.22 |
| 68382 | beta-galactosidase | - | 3.2.1.23 |
| 68382 | beta-glucuronidase | - | 3.2.1.31 |
| 68382 | alpha-glucosidase | - | 3.2.1.20 |
| 68382 | beta-glucosidase | - | 3.2.1.21 |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68382 | alpha-mannosidase | - | 3.2.1.24 |
| 68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
| @ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123254 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_1809.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_1024;97_1194;98_1430;99_1809&stattab=map
- Last taxonomy: Luteovulum
- 16S sequence: X53855
- Sequence Identity:
- Total samples: 17229
- soil counts: 1540
- aquatic counts: 10335
- animal counts: 4862
- plant counts: 492
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 2125 | 1 | Risk group (German classification) |
| 123254 | 1 | Risk group (French classification) |
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodobacter sphaeroides 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF338182 | 1151 | ena | 1063 |
| 20218 | Rhodobacter sphaeroides strain ATCC 17023 16S ribosomal RNA gene, partial sequence | DQ342321 | 1389 | ena | 1063 |
| 20218 | Rhodobacter sphaeroides (ATCC 17023) 16S ribosomal RNA (partial) | M55498 | 262 | ena | 272943 |
| 20218 | R. sphaeroides ribosomal RNA operon rrnA(16S rRNA,Ile tRNA, Ala tRNA, 23S rRNA, 5S rRNA, f-Met tRNA) | X53853 | 6442 | ena | 1063 |
| 20218 | R. sphaeroides ribosomal RNA operon rrnB (16S rRNA,Ile tRNA, Ala tRNA, 23S rRNA, 5S rRNA, f-Met tRNA) | X53854 | 6565 | ena | 1063 |
| 20218 | R. sphaeroides ribosomal RNA operon rrnC (16S rRNA,Ile tRNA, Ala tRNA, 23S rRNA, 5S rRNA, f-Met tRNA) | X53855 | 6163 | ena | 1063 |
| 20218 | Rhodobacter sphaeroides gene for 16S rRNA, strain: IFO 12203 | D16425 | 1389 | ena | 1063 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cereibacter sphaeroides NBRC 12203 | GCA_007991035 | contig | ncbi | 1063 |
| 66792 | Cereibacter sphaeroides DSM 158 | GCA_009797605 | complete | ncbi | 1063 |
| 66792 | Rhodobacter sphaeroides strain DSM 158 | 1063.96 | complete | patric | 1063 |
| 66792 | Rhodobacter sphaeroides strain NBRC 12203 | 1063.83 | wgs | patric | 1063 |
| 66792 | Luteovulum sphaeroides NCIB 8253 | 651717148 | draft | img | 1063 |
GC content
- @ref: 67770
- GC-content: 68.4-69.9
- method: Buoyant density centrifugation (BD)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 72.744 | no |
| flagellated | no | 75.757 | no |
| gram-positive | no | 99.095 | no |
| anaerobic | no | 53.455 | yes |
| aerobic | no | 52.235 | no |
| halophile | no | 86.442 | no |
| spore-forming | no | 96.392 | no |
| glucose-util | yes | 88.077 | no |
| thermophile | no | 99.391 | yes |
| glucose-ferment | no | 89.544 | no |
External links
@ref: 2125
culture collection no.: DSM 158, ATCC 17023, IAM 14237, NCIB 8253, CCUG 31486, ATCC 11167, LMG 2827, ATCC 14690, CIP 60.6, ATH 2.4.1, JCM 6121, BCRC 16407, CECT 300, CGMCC 1.1737, CGMCC 1.3368, IFO 12203, KCTC 1434, NBRC 12203, NCIMB 8253, NCIMB 8287
straininfo link
- @ref: 82990
- straininfo: 43566
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 12621 | [Fermentation of pyruvate by 7 species of phototrophic purple bacteria]. | Gurgun V, Kirchner G, Pfennig N | Z Allg Mikrobiol | 10.1002/jobm.3630160802 | 1976 | Acetates/metabolism, Acetoin/biosynthesis, Anaerobiosis, Bacterial Proteins/biosynthesis, Butylene Glycols/metabolism, Carbon Dioxide/biosynthesis, Chromatium/*metabolism, Darkness, Fermentation, Formates/metabolism, Hydrogen-Ion Concentration, Lactates/biosynthesis, Propionates/metabolism, Pyruvates/*metabolism, Rhodobacter sphaeroides/metabolism, Rhodopseudomonas/*metabolism, Rhodospirillum rubrum/*metabolism, Species Specificity | Phylogeny |
| Enzymology | 1499989 | Cloning of poly(3-hydroxybutyric acid) synthase genes of Rhodobacter sphaeroides and Rhodospirillum rubrum and heterologous expression in Alcaligenes eutrophus. | Hustede E, Steinbuchel A, Schlegel HG | FEMS Microbiol Lett | 10.1016/0378-1097(92)90476-5 | 1992 | Acyltransferases/biosynthesis/*genetics, Alcaligenes/genetics, Cloning, Molecular, Cosmids, Cytoplasmic Granules/ultrastructure, Genetic Complementation Test, Hydroxybutyrates/*metabolism, Nucleic Acid Hybridization, Polyesters/*metabolism, Rhodobacter sphaeroides/enzymology/*genetics, Rhodospirillum rubrum/enzymology/*genetics | Metabolism |
| Pathogenicity | 1898897 | Diphosphoryl lipid A derived from lipopolysaccharide (LPS) of Rhodopseudomonas sphaeroides inhibits activation of 70Z/3 cells by LPS. | Kirkland TN, Qureshi N, Takayama K | Infect Immun | 10.1128/iai.59.1.131-136.1991 | 1991 | Animals, B-Lymphocytes/*drug effects/immunology, Hematopoietic Stem Cells/*drug effects, Immunoglobulin kappa-Chains/genetics, Lipid A/*analogs & derivatives/pharmacology, Lipopolysaccharides/*antagonists & inhibitors, Lymphocyte Activation/*drug effects, Mice, RNA, Messenger/analysis, Receptors, Antigen, B-Cell/analysis, Rhodobacter sphaeroides/*metabolism, Structure-Activity Relationship | Metabolism |
| 1987057 | Diphosphoryl lipid A obtained from the nontoxic lipopolysaccharide of Rhodopseudomonas sphaeroides is an endotoxin antagonist in mice. | Qureshi N, Takayama K, Kurtz R | Infect Immun | 10.1128/iai.59.1.441-444.1991 | 1991 | Animals, Interleukin-1/biosynthesis, Lipid A/*analogs & derivatives/pharmacology, Lipopolysaccharides/*antagonists & inhibitors, Mice, Mice, Inbred C3H, Rhodobacter sphaeroides/*analysis, Tumor Necrosis Factor-alpha/biosynthesis | ||
| Metabolism | 2007601 | Chemical reduction of 3-oxo and unsaturated groups in fatty acids of diphosphoryl lipid A from the lipopolysaccharide of Rhodopseudomonas sphaeroides. Comparison of biological properties before and after reduction. | Qureshi N, Takayama K, Meyer KC, Kirkland TN, Bush CA, Chen L, Wang R, Cotter RJ | J Biol Chem | S0021-9258(18)38150-X | 1991 | Catalysis, Chromatography, Gas, Chromatography, High Pressure Liquid, Escherichia coli/metabolism, Fatty Acids, Unsaturated/*chemistry, Lipid A/*analogs & derivatives/chemistry, Lipopolysaccharides/*chemistry, Magnetic Resonance Spectroscopy, Mass Spectrometry, Models, Molecular, Oxidation-Reduction, Rhodobacter sphaeroides/*metabolism | |
| Pathogenicity | 2784418 | Diphosphoryl lipid A from Rhodopseudomonas sphaeroides ATCC 17023 blocks induction of cachectin in macrophages by lipopolysaccharide. | Takayama K, Qureshi N, Beutler B, Kirkland TN | Infect Immun | 10.1128/iai.57.4.1336-1338.1989 | 1989 | Animals, Lipid A/*analogs & derivatives/physiology, Lipopolysaccharides/*pharmacology, Macrophages/drug effects/*metabolism/microbiology, Mice, Rhodobacter sphaeroides/*physiology, Tumor Necrosis Factor-alpha/*antagonists & inhibitors/biosynthesis | Metabolism |
| 2986691 | Soluble cytochrome composition of the purple phototrophic bacterium, Rhodopseudomonas sphaeroides ATCC 17023. | Meyer TE, Cusanovich MA | Biochim Biophys Acta | 10.1016/0005-2728(85)90263-4 | 1985 | *Bacterial Proteins, Cytochrome b Group/analysis, Cytochrome c Group/analysis, Cytochromes/*analysis/genetics, Cytochromes c2, Hemeproteins/analysis, *NADPH Oxidases, Rhodobacter sphaeroides/*analysis/genetics, Solubility | ||
| 3258599 | Location of fatty acids in lipid A obtained from lipopolysaccharide of Rhodopseudomonas sphaeroides ATCC 17023. | Qureshi N, Honovich JP, Hara H, Cotter RJ, Takayama K | J Biol Chem | S0021-9258(18)60592-7 | 1988 | Chemical Phenomena, Chemistry, Chromatography, Chromatography, High Pressure Liquid, Fatty Acids/*analysis, Lipid A/*analysis, Lipopolysaccharides/*analysis, Mass Spectrometry, Molecular Conformation, Rhodobacter sphaeroides/*analysis | ||
| Enzymology | 6333338 | The structure of the polysaccharide moiety of Rhodopseudomonas sphaeroides ATCC 17023 lipopolysaccharide. | Salimath PV, Tharanathan RN, Weckesser J, Mayer H | Eur J Biochem | 10.1111/j.1432-1033.1984.tb08454.x | 1984 | Chemical Phenomena, Chemistry, Dansyl Compounds, Gas Chromatography-Mass Spectrometry, Hydrolysis, Lipopolysaccharides/*isolation & purification, Methylation, Oligosaccharides/analysis, Rhodobacter sphaeroides/*analysis | Phylogeny |
| Phylogeny | 6602801 | Nontoxic lipopolysaccharide from Rhodopseudomonas sphaeroides ATCC 17023. | Strittmatter W, Weckesser J, Salimath PV, Galanos C | J Bacteriol | 10.1128/jb.155.1.153-158.1983 | 1983 | Carbohydrates/analysis, Lipopolysaccharides/*isolation & purification, Mass Spectrometry, Rhodobacter sphaeroides/*analysis, Salmonella/analysis, Serotyping, Species Specificity | Enzymology |
| Enzymology | 6604629 | Structural studies on the non-toxic lipid A from Rhodopseudomonas sphaeroides ATCC 17023. | Salimath PV, Weckesser J, Strittmatter W, Mayer H | Eur J Biochem | 10.1111/j.1432-1033.1983.tb07726.x | 1983 | Chemical Phenomena, Chemistry, Chromatography/methods, Fatty Acids/analysis, Lipids/*isolation & purification, Mass Spectrometry, Phosphates/analysis, Rhodobacter sphaeroides/*analysis, Structure-Activity Relationship | Phylogeny |
| Metabolism | 6970593 | Low temperature excitation and emission spectroscopy of the photosynthetic bacteria Rhodopseudomonas sphaeroides 'wild-type' strain ATCC 17023. | Kaiser GH, Beck J, von Schutz JU, Wolf HC | Biochim Biophys Acta | 10.1016/0005-2728(81)90135-3 | 1981 | Bacteriochlorophylls/metabolism, Freezing, Kinetics, *Photosynthesis, Pigments, Biological/metabolism, Protoporphyrins/metabolism, Rhodobacter sphaeroides/*metabolism, Spectrometry, Fluorescence, Spectrophotometry | Enzymology |
| Enzymology | 6978883 | Nitrate reductase from Rhodopseudomonas sphaeroides. | Kerber NL, Cardenas J | J Bacteriol | 10.1128/jb.150.3.1091-1097.1982 | 1982 | Iron/pharmacology, Light, Molybdenum/pharmacology, Nitrate Reductases/*metabolism, Nitrates/metabolism, Nitrites/metabolism, Oxidation-Reduction, Oxygen/pharmacology, *Potassium Compounds, Rhodobacter sphaeroides/*enzymology/growth & development | Metabolism |
| Enzymology | 7812271 | Diphosphoryl lipid A derived from the lipopolysaccharide (LPS) of Rhodobacter sphaeroides ATCC 17023 is a potent competitive LPS inhibitor in murine macrophage-like J774.1 cells. | Kirikae T, Schade FU, Kirikae F, Qureshi N, Takayama K, Rietschel ET | FEMS Immunol Med Microbiol | 10.1111/j.1574-695X.1994.tb00499.x | 1994 | Animals, Binding, Competitive, Cell Line, Interleukin-6/immunology, Lipid A/*analogs & derivatives/immunology/isolation & purification, Lipopolysaccharides/chemistry/*immunology, Macrophages/*immunology, Mice, Rhodobacter sphaeroides/*immunology, Tumor Necrosis Factor-alpha/immunology | Phylogeny |
| Enzymology | 8487309 | New crystal form of the photosynthetic reaction centre from Rhodobacter sphaeroides of improved diffraction quality. | Buchanan SK, Fritzsch G, Ermler U, Michel H | J Mol Biol | 10.1006/jmbi.1993.1246 | 1993 | Crystallization, Membrane Proteins/*chemistry/isolation & purification, Photosynthetic Reaction Center Complex Proteins/*chemistry/isolation & purification, Rhodobacter sphaeroides/*chemistry, X-Ray Diffraction | Phylogeny |
| Enzymology | 8730872 | Isolation of periplasmic nitrate reductase genes from Rhodobacter sphaeroides DSM 158: structural and functional differences among prokaryotic nitrate reductases. | Reyes F, Roldan MD, Klipp W, Castillo F, Moreno-Vivian C | Mol Microbiol | 10.1111/j.1365-2958.1996.tb02475.x | 1996 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA, Bacterial/genetics, Gene Expression, *Genes, Bacterial, Molecular Sequence Data, Molecular Structure, Mutation, Nitrate Reductase, Nitrate Reductases/chemistry/*genetics/metabolism, Oxygen/pharmacology, Quaternary Ammonium Compounds/pharmacology, Restriction Mapping, Rhodobacter sphaeroides/*enzymology/*genetics, Sequence Homology, Amino Acid | Genetics |
| 8952944 | The effect of different levels of the B800-850 light-harvesting complex on intracytoplasmic membrane development in Rhodobacter sphaeroides | Sturgis JN, Niedermann RA | Arch Microbiol | 10.1007/s002030050321 | 1996 | |||
| Enzymology | 9370368 | Molecular characterisation of the pifC gene encoding translation initiation factor 3, which is required for normal photosynthetic complex formation in Rhodobacter sphaeroides NCIB 8253. | Babic S, Hunter CN, Rakhlin NJ, Simons RW, Phillips-Jones MK | Eur J Biochem | 10.1111/j.1432-1033.1997.t01-1-00564.x | 1997 | Amino Acid Sequence, Bacterial Proteins/*biosynthesis/*genetics/isolation & purification, Base Sequence, Cloning, Molecular, Escherichia coli/genetics/metabolism, Eukaryotic Initiation Factor-3, *Genes, Plant, Genotype, Molecular Sequence Data, Peptide Initiation Factors/*biosynthesis/*genetics/isolation & purification, *Photosynthesis, Recombinant Fusion Proteins/biosynthesis, Restriction Mapping, Rhodobacter sphaeroides/*genetics/*metabolism, Sequence Alignment, Sequence Homology, Amino Acid, beta-Galactosidase/biosynthesis | Genetics |
| Genetics | 9560320 | Periplasmic nitrate-reducing system of the phototrophic bacterium Rhodobacter sphaeroides DSM 158: transcriptional and mutational analysis of the napKEFDABC gene cluster. | Reyes F, Gavira M, Castillo F, Moreno-Vivian C | Biochem J | 10.1042/bj3310897 | 1998 | Amino Acid Sequence, Bacterial Proteins/chemistry, Cloning, Molecular, DNA Mutational Analysis, Electron Transport/physiology, Gene Expression Regulation, Enzymologic/genetics, Genes, Bacterial/genetics, Molecular Sequence Data, Mutagenesis, Insertional/genetics, Nitrate Reductase, Nitrate Reductases/*chemistry/genetics, Paraquat/metabolism, Periplasm/*enzymology, Promoter Regions, Genetic/genetics, Restriction Mapping, Rhodobacter sphaeroides/*metabolism, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Transcription, Genetic/genetics | Enzymology |
| Enzymology | 9575236 | Purification and characterization of a catalase from the nonsulfur phototrophic bacterium Rhodobacter sphaeroides ATH 2.4.1 and its role in the oxidative stress response. | Terzenbach DP, Blaut M | Arch Microbiol | 10.1007/s002030050603 | 1998 | Amino Acid Sequence, Bacterial Proteins/chemistry/classification/genetics/*isolation & purification, Catalase/chemistry/genetics/*isolation & purification, Electrophoresis, Polyacrylamide Gel, Enzyme Inhibitors/pharmacology, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidative Stress/physiology, Rhodobacter sphaeroides/*enzymology/growth & development, Sequence Analysis, Spectrum Analysis | Phylogeny |
| Metabolism | 11872721 | Regulation of nap gene expression and periplasmic nitrate reductase activity in the phototrophic bacterium Rhodobacter sphaeroides DSM158. | Gavira M, Roldan MD, Castillo F, Moreno-Vivian C | J Bacteriol | 10.1128/JB.184.6.1693-1702.2002 | 2002 | *Arabidopsis Proteins, Dose-Response Relationship, Drug, Enzyme Activation, Gene Expression Regulation, Bacterial, Genes, Bacterial, Multigene Family, Nitrate Reductase, Nitrate Reductases/*metabolism, Nitrates/pharmacology, Nitrites/pharmacology, Periplasm/metabolism, Plant Proteins/genetics/*metabolism, Protein Biosynthesis, Quaternary Ammonium Compounds/pharmacology, Recombinant Fusion Proteins/metabolism, Rhodobacter sphaeroides/growth & development/*metabolism, Transcription, Genetic | Enzymology |
| Phylogeny | 12508853 | Farnesyl diphosphate synthase gene of three phototrophic bacteria and its use as a phylogenetic marker. | Cantera JJL, Kawasaki H, Seki T | Int J Syst Evol Microbiol | 10.1099/00207713-52-6-1953 | 2002 | Alkyl and Aryl Transferases/*genetics, Alphaproteobacteria/classification/*enzymology/*genetics, Amino Acid Sequence, Base Sequence, DNA, Bacterial/genetics, *Genes, Bacterial, Genetic Markers, Geranyltranstransferase, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacter capsulatus/classification/*enzymology/*genetics, Rhodobacter sphaeroides/classification/*enzymology/*genetics, Sequence Homology, Amino Acid, Species Specificity | Enzymology |
| Metabolism | 15371424 | NapF is a cytoplasmic iron-sulfur protein required for Fe-S cluster assembly in the periplasmic nitrate reductase. | Olmo-Mira MF, Gavira M, Richardson DJ, Castillo F, Moreno-Vivian C, Roldan MD | J Biol Chem | 10.1074/jbc.M406502200 | 2004 | Amino Acid Sequence, Iron/*metabolism, Molecular Sequence Data, Nitrate Reductase, Nitrate Reductases/*metabolism, Periplasmic Proteins/*metabolism, Rhodobacter sphaeroides/enzymology/metabolism, Sequence Alignment, Sequence Analysis, Protein, Spectrophotometry, Sulfur/*metabolism, Time Factors | Enzymology |
| Metabolism | 16684526 | Redox-responsive in vitro modulation of the signalling state of the isolated PrrB sensor kinase of Rhodobacter sphaeroides NCIB 8253. | Potter CA, Jeong EL, Williamson MP, Henderson PJ, Phillips-Jones MK | FEBS Lett | 10.1016/j.febslet.2006.04.079 | 2006 | Adenosine Monophosphate/pharmacology, Adenosine Triphosphate/pharmacology, Bacterial Proteins/*metabolism, Dithiothreitol/pharmacology, Energy Metabolism, NAD/pharmacology, Oxidation-Reduction, Phosphorylation, Protein Kinases/*metabolism, Rhodobacter sphaeroides/drug effects/*enzymology, Signal Transduction | Enzymology |
| Phylogeny | 18676458 | Rhodobacter megalophilus sp. nov., a phototroph from the Indian Himalayas possessing a wide temperature range for growth. | Arunasri K, Venkata Ramana V, Sproer C, Sasikala Ch, Ramana ChV | Int J Syst Evol Microbiol | 10.1099/ijs.0.65642-0 | 2008 | *Altitude, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fourier Analysis, Genes, rRNA, Genotype, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacter/*classification/genetics/*growth & development/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Temperature | Genetics |
| Phylogeny | 19854875 | Rhodobacter johrii sp. nov., an endospore-producing cryptic species isolated from semi-arid tropical soils. | Girija KR, Sasikala C, Ramana CV, Sproer C, Takaichi S, Thiel V, Imhoff JF | Int J Syst Evol Microbiol | 10.1099/ijs.0.011718-0 | 2009 | DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Rhodobacter/*classification/genetics/*isolation & purification, *Soil Microbiology, Sorghum/microbiology, Spores, Bacterial/*classification/genetics/*isolation & purification | Genetics |
| Metabolism | 20180320 | Bio-hydrogen production using a two-stage fermentation process. | Alalayah WM, Kalil MS, Kadhum AA, Jahim JM, Jaapar SZ, Alauj NM | Pak J Biol Sci | 10.3923/pjbs.2009.1462.1467 | 2009 | Acetic Acid/metabolism, Anaerobiosis/physiology, Biofuels/*microbiology, Biomass, Clostridium/metabolism, Darkness, Fermentation/*physiology, Glucose/metabolism, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Light, Rhodobacter sphaeroides/metabolism, Sterilization, Temperature | Biotechnology |
| Metabolism | 20384278 | The effect of aeration, agitation and light on biohydrogen production by Rhodobacter sphaeroides NCIMB 8253. | Jaapar SZ, Kalil MS, Anuar N | Pak J Biol Sci | 10.3923/pjbs.2009.1253.1259 | 2009 | Fermentation, Hydrogen/*metabolism, Industrial Microbiology, *Light, Oxygen/*metabolism, Rhodobacter sphaeroides/cytology/*metabolism | Biotechnology |
| Stress | 20544803 | Effects of ethanol, formaldehyde, and gentle heat fixation in confocal resonance Raman microscopy of purple nonsulfur bacteria. | Kniggendorf AK, Gaul TW, Meinhardt-Wollweber M | Microsc Res Tech | 10.1002/jemt.20889 | 2011 | Ethanol/chemistry, Fixatives/chemistry, Formaldehyde/chemistry, Hot Temperature, Microscopy, Confocal, Rhodospirillaceae/*chemistry/cytology, Spectrum Analysis, Raman, Tissue Fixation/instrumentation/*methods | |
| Metabolism | 20852980 | Aniline-induced tryptophan production and identification of indole derivatives from three purple bacteria. | Mujahid M, Sasikala Ch, Ramana ChV | Curr Microbiol | 10.1007/s00284-010-9609-2 | 2010 | Aniline Compounds/*metabolism, Betaproteobacteria/*metabolism, Biodegradation, Environmental, Chromatography, High Pressure Liquid, Chromatography, Liquid, Indoleacetic Acids/isolation & purification, Indoles/analysis/isolation & purification/*metabolism, Industrial Waste, Mass Spectrometry, Metabolic Networks and Pathways, Rhodobacter sphaeroides/*metabolism, Rhodospirillum rubrum/*metabolism, Tandem Mass Spectrometry, Tryptophan/*metabolism, ortho-Aminobenzoates/isolation & purification | Enzymology |
| Phylogeny | 23104358 | Falsirhodobacter halotolerans gen. nov., sp. nov., isolated from dry soils of a solar saltern. | Subhash Y, Tushar L, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.044107-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, *Soil Microbiology, Triterpenes/analysis | Genetics |
| Metabolism | 24497982 | Molecular cloning, overexpression and characterization of a novel water channel protein from Rhodobacter sphaeroides. | Erbakan M, Shen YX, Grzelakowski M, Butler PJ, Kumar M, Curtis WR | PLoS One | 10.1371/journal.pone.0086830 | 2014 | Algorithms, Amino Acid Sequence, Aquaporins/classification/genetics/*metabolism, Bacterial Proteins/genetics/*metabolism, Biological Transport, Blotting, Western, Cell Membrane Permeability, Cloning, Molecular, Gene Expression Regulation, Bacterial, Liposomes/metabolism/ultrastructure, Luminescent Proteins/genetics/metabolism, Microscopy, Electron, Models, Biological, Molecular Sequence Data, Phylogeny, Recombinant Proteins/*metabolism, Rhodobacter sphaeroides/genetics/*metabolism, Sequence Homology, Amino Acid, Water/metabolism | Phylogeny |
| Metabolism | 25459807 | Hydrogen production by Rhodobacter sphaeroides DSM 158 under intense irradiation. | Krujatz F, Hartel P, Helbig K, Haufe N, Thierfelder S, Bley T, Weber J | Bioresour Technol | 10.1016/j.biortech.2014.10.061 | 2014 | Biomass, Hydrogen/*metabolism, Photobioreactors/*microbiology, Rhodobacter sphaeroides/*metabolism | Biotechnology |
| Metabolism | 26037711 | Light-field-characterization in a continuous hydrogen-producing photobioreactor by optical simulation and computational fluid dynamics. | Krujatz F, Illing R, Krautwer T, Liao J, Helbig K, Goy K, Opitz J, Cuniberti G, Bley T, Weber J | Biotechnol Bioeng | 10.1002/bit.25667 | 2015 | *Chemical Phenomena, *Hydrodynamics, Hydrogen/*metabolism, *Light, Photobioreactors/*microbiology, Rhodobacter sphaeroides/*growth & development/*metabolism | |
| Biotechnology | 26875086 | Optimization of Biomass and 5-Aminolevulinic Acid Production by Rhodobacter sphaeroides ATCC17023 via Response Surface Methodology. | Liu S, Zhang G, Li J, Li X, Zhang J | Appl Biochem Biotechnol | 10.1007/s12010-016-2005-z | 2016 | Aminolevulinic Acid/chemistry/*metabolism, *Biomass, Fatty Acids, Volatile/chemistry/*pharmacology, Gene Expression Regulation, Bacterial, Porphobilinogen Synthase/chemistry, Rhodobacter sphaeroides/chemistry/drug effects/growth & development, Surface Properties, Waste Water/chemistry | Metabolism |
| Metabolism | 34717624 | Improving CoQ10 productivity by strengthening glucose transmembrane of Rhodobacter sphaeroides. | Yang Y, Li L, Sun H, Li Z, Qi Z, Liu X | Microb Cell Fact | 10.1186/s12934-021-01695-z | 2021 | Bacterial Proteins/genetics/*metabolism, Biological Transport, Biomass, Calcium-Binding Proteins/genetics/metabolism, Escherichia coli Proteins/genetics, Fermentation, Glucokinase/genetics/metabolism, Glucose/*metabolism, Industrial Microbiology, *Metabolic Engineering, Monosaccharide Transport Proteins/genetics/metabolism, Mutation, Periplasmic Binding Proteins/genetics/metabolism, Protein Kinases/genetics, Rhodobacter sphaeroides/genetics/*metabolism, Ubiquinone/*analogs & derivatives/biosynthesis | Biotechnology |
| 36363789 | Effects of Seed Bio-Priming by Purple Non-Sulfur Bacteria (PNSB) on the Root Development of Rice. | Iwai R, Uchida S, Yamaguchi S, Sonoda F, Tsunoda K, Nagata H, Nagata D, Koga A, Goto M, Maki TA, Hayashi S, Yamamoto S, Miyasaka H | Microorganisms | 10.3390/microorganisms10112197 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2125 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 158) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-158 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 36213 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/9817 | ||||
| 50618 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 31486) | https://www.ccug.se/strain?id=31486 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 68382 | Automatically annotated from API zym | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 82990 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43566.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 123254 | Curators of the CIP | Collection of Institut Pasteur (CIP 60.6) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2060.6 |