Strain identifier

BacDive ID: 138019

Type strain: No

Species: Corynebacterium amycolatum

Strain Designation: 486-86

Strain history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 486-86 <- Broussais Hosp., Paris, France

NCBI tax ID(s): 43765 (species)

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General

@ref: 38969

BacDive-ID: 138019

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Corynebacterium amycolatum 486-86 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Corynebacteriaceae.

NCBI tax id

  • NCBI tax id: 43765
  • Matching level: species

strain history

  • @ref: 38969
  • history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 486-86 <- Broussais Hosp., Paris, France

doi: 10.13145/bacdive138019.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium amycolatum
  • full scientific name: Corynebacterium amycolatum Collins et al. 1988

@ref: 38969

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium amycolatum

strain designation: 486-86

type strain: no

Morphology

cell morphology

  • @ref: 38969
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 38969

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38969MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
38969CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
38969positivegrowth37
38969positivegrowth30-41
38969nogrowth10
38969nogrowth15
38969nogrowth25
38969nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 38969
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 38969
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3896916947citrate-carbon source
389694853esculin-hydrolysis
38969606565hippurate+hydrolysis
3896917632nitrate-reduction
3896917632nitrate-respiration
68371Potassium 5-ketogluconate-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from

antibiotic resistance

  • @ref: 38969
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 38969
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
3896915688acetoin-
3896917234glucose+

enzymes

@refvalueactivityec
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase-3.2.1.20
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase-3.4.11.1
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
38969oxidase-
38969beta-galactosidase-3.2.1.23
38969alcohol dehydrogenase-1.1.1.1
38969gelatinase+
38969amylase+
38969DNase-
38969caseinase-3.4.21.50
38969catalase+1.11.1.6
38969tween esterase+
38969gamma-glutamyltransferase-2.3.2.2
38969lecithinase-
38969lipase-
38969lysine decarboxylase-4.1.1.18
38969ornithine decarboxylase-4.1.1.17
38969protease-
38969urease-3.5.1.5
68382beta-glucuronidase-3.2.1.31
68382naphthol-AS-BI-phosphohydrolase+
68382valine arylamidase-

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38969-++++-----++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
38969+---+----++++--------------+--++-----------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
38969++-++--+--+-+------+-----------+-----------------+-------------------------+---++-------+-+--------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38969ParisFranceFRAEurope
38969ParisFranceFRAEuropeHuman, Urine1986

Safety information

risk assessment

  • @ref: 38969
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38969

culture collection no.: CIP 102482

straininfo link

  • @ref: 94820
  • straininfo: 68136

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38969Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102482Collection of Institut Pasteur (CIP 102482)
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
94820Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68136.1