Strain identifier

BacDive ID: 137989

Type strain: No

Species: Clostridium tertium

Strain Designation: 383-86

Strain history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 383-86 <- Pau Hosp., Pau, France

NCBI tax ID(s): 1559 (species)

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General

@ref: 38939

BacDive-ID: 137989

keywords: 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Clostridium tertium 383-86 is an anaerobe, spore-forming, mesophilic bacterium of the family Clostridiaceae.

NCBI tax id

  • NCBI tax id: 1559
  • Matching level: species

strain history

@refhistory
67770CIP 102392 <-- Lab. Ident. Inst. Pasteur, Paris, France; 383-86 <-- Pau Hosp., France.
38939CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France: strain 383-86 <- Pau Hosp., Pau, France

doi: 10.13145/bacdive137989.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Clostridium
  • species: Clostridium tertium
  • full scientific name: Clostridium tertium (Henry 1917) Bergey et al. 1923 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus tertius

@ref: 38939

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Clostridiaceae

genus: Clostridium

species: Clostridium tertium

strain designation: 383-86

type strain: no

Morphology

cell morphology

  • @ref: 38939
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 38939

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38939MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
38939CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
38939positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38939
  • oxygen tolerance: anaerobe

spore formation

  • @ref: 38939
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3893917108D-arabinose-degradation
3893915824D-fructose+/-degradation
3893917634D-glucose+/-degradation
3893965327D-xylose+/-degradation
3893917057cellobiose+/-degradation
3893917716lactose+/-degradation
3893917306maltose+/-degradation
3893917814salicin+/-degradation
3893917992sucrose+/-degradation
389394853esculin+hydrolysis
3893917632nitrate+reduction
3893916301nitrite-reduction
3893917632nitrate+respiration

metabolite production

  • @ref: 38939
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
38939oxidase-
38939beta-galactosidase+3.2.1.23
38939gelatinase-
38939amylase-
38939DNase-
38939caseinase+3.4.21.50
38939catalase-1.11.1.6
38939tween esterase+
38939lecithinase-
38939lipase-
38939protease-
38939urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38939------------+-------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38939PauFranceFRAEurope
38939PauFranceFRAEuropeHuman, Skin ulcer1986

taxonmaps

  • @ref: 69479
  • File name: preview.99_3264.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1253;97_2035;98_2501;99_3264&stattab=map
  • Last taxonomy: Clostridium tertium
  • 16S sequence: LC480788
  • Sequence Identity:
  • Total samples: 7812
  • soil counts: 574
  • aquatic counts: 386
  • animal counts: 6806
  • plant counts: 46

Safety information

risk assessment

  • @ref: 38939
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Clostridium tertium JCM 11057 gene for 16S ribosomal RNA, partial sequence
  • accession: LC480788
  • length: 1456
  • database: ena
  • NCBI tax ID: 1559

External links

@ref: 38939

culture collection no.: CIP 102392, JCM 11057

straininfo link

  • @ref: 94794
  • straininfo: 67946

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38939Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102392Collection of Institut Pasteur (CIP 102392)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
94794Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67946.1