Strain identifier

BacDive ID: 137982

Type strain: No

Species: Agrobacterium radiobacter

Strain Designation: 358-86

Strain history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France, Agrobacterium tumefaciens: strain 358-86 <- A. Béclère Hosp., Clamart, France

NCBI tax ID(s): 358 (species)

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General

@ref: 38932

BacDive-ID: 137982

keywords: Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Agrobacterium radiobacter 358-86 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Rhizobiaceae.

NCBI tax id

  • NCBI tax id: 358
  • Matching level: species

strain history

  • @ref: 38932
  • history: CIP <- 1986, Lab. Ident. Inst. Pasteur, Paris, France, Agrobacterium tumefaciens: strain 358-86 <- A. Béclère Hosp., Clamart, France

doi: 10.13145/bacdive137982.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Rhizobiaceae
  • genus: Agrobacterium
  • species: Agrobacterium radiobacter
  • full scientific name: Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacillus radiobacter
    20215Rhizobium radiobacter
    20215Beijerinckia fluminensis

@ref: 38932

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Hyphomicrobiales

family: Rhizobiaceae

genus: Agrobacterium

species: Agrobacterium radiobacter

strain designation: 358-86

type strain: no

Morphology

cell morphology

  • @ref: 38932
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
38932MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
38932CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
38932CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

  • @ref: 38932
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 38932
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3893217632nitrate+reduction
3893216301nitrite+reduction

metabolite production

  • @ref: 38932
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
38932oxidase+
38932catalase+1.11.1.6
38932urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
38932-+++-++++-+++--+++--

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
38932ClamartFranceFRAEurope
38932ClamartFranceFRAEuropeHuman, Blood1986

Safety information

risk assessment

  • @ref: 38932
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 38932

culture collection no.: CIP 102371

straininfo link

  • @ref: 94788
  • straininfo: 69883

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
38932Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102371Collection of Institut Pasteur (CIP 102371)
68382Automatically annotated from API zym
94788Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID69883.1