Strain identifier

BacDive ID: 13798

Type strain: Yes

Species: Sulfitobacter marinus

Strain Designation: SW-265

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 394264 (species)

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General

@ref: 17199

BacDive-ID: 13798

DSM-Number: 23422

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped

description: Sulfitobacter marinus SW-265 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 394264
  • Matching level: species

strain history

@refhistory
17199<- JCM <- J.-H. Yoon; SW-265
67770J.-H. Yoon SW-265.
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive13798.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Sulfitobacter
  • species: Sulfitobacter marinus
  • full scientific name: Sulfitobacter marinus Yoon et al. 2007

@ref: 17199

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Sulfitobacter

species: Sulfitobacter marinus

full scientific name: Sulfitobacter marinus Yoon et al. 2007

strain designation: SW-265

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31909negative1.05 µm0.35 µmovoid-shapedno
67771negative
69480negative99.997

pigmentation

  • @ref: 31909
  • production: no

Culture and growth conditions

culture medium

  • @ref: 17199
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17199positivegrowth28mesophilic
31909positivegrowth04-35
31909positiveoptimum30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepH
31909positivegrowth5.0-8.0
31909positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31909aerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
31909NaClpositivegrowth0.1-12.0 %
31909NaClpositiveoptimum2 %

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3190929864mannitol+carbon source
3190926271proline+carbon source
3190930911sorbitol+carbon source
3190953424tween 20+carbon source
3190953423tween 40+carbon source
3190953425tween 60+carbon source
3190953426tween 80+carbon source

enzymes

@refvalueactivityec
31909alkaline phosphatase+3.1.3.1
31909catalase+1.11.1.6
31909cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
17199seawaterHwajinpo, East SeaRepublic of KoreaKORAsia
67770Seawater
67771From seawaterRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 17199
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17199
  • description: Sulfitobacter marinus strain SW-265 16S ribosomal RNA gene, partial sequence
  • accession: DQ683726
  • length: 1420
  • database: ena
  • NCBI tax ID: 394264

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfitobacter marinus strain DSM 23422394264.5wgspatric394264
66792Sulfitobacter marinus DSM 234222619619641draftimg394264
67770Sulfitobacter marinus DSM 23422GCA_900116285contigncbi394264

GC content

@refGC-contentmethod
3190957.8
6777057.8high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.15no
anaerobicno98.697yes
halophileyes92.076no
spore-formingno95.903no
glucose-utilyes76.728no
aerobicyes93.704no
flagellatedno81.927yes
motileno51.928yes
thermophileno97.076no
glucose-fermentno89.99no

External links

@ref: 17199

culture collection no.: DSM 23422, JCM 13602, KCTC 12738

straininfo link

  • @ref: 82976
  • straininfo: 297341

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17267968Sulfitobacter marinus sp. nov., isolated from seawater of the East Sea in Korea.Yoon JH, Kang SJ, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.64637-02007Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA/genetics, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Movement, Phylogeny, Quinones/analysis/chemistry, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/cytology/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Temperature, Water MicrobiologyGenetics
Phylogeny22611199Pelagimonas varians gen. nov., sp. nov., isolated from the southern North Sea.Hahnke S, Tindall BJ, Schumann P, Simon M, Brinkhoff TInt J Syst Evol Microbiol10.1099/ijs.0.040675-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, North Sea, Phospholipids/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17199Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23422)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23422
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31909Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2816628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82976Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297341.1StrainInfo: A central database for resolving microbial strain identifiers