Strain identifier

BacDive ID: 13797

Type strain: Yes

Species: Sulfitobacter litoralis

Strain history: <- JR Park, KRIBB <- ZX Quan, KRIBB

NCBI tax ID(s): 335975 (species)

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General

@ref: 7071

BacDive-ID: 13797

DSM-Number: 17584

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Sulfitobacter litoralis DSM 17584 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 335975
  • Matching level: species

strain history

@refhistory
7071<- J. R. Park, Korea Res. Inst. of Biosci. and Biotechnol. (KRIBB); Iso 3 <- J. R. Park
67771<- JR Park, KRIBB <- ZX Quan, KRIBB

doi: 10.13145/bacdive13797.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Sulfitobacter
  • species: Sulfitobacter litoralis
  • full scientific name: Sulfitobacter litoralis Park et al. 2007

@ref: 7071

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Sulfitobacter

species: Sulfitobacter litoralis

full scientific name: Sulfitobacter litoralis Park et al. 2007

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31783negative1.1 µm0.9 µmrod-shapedyes
67771negative

pigmentation

  • @ref: 31783
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7071
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7071positivegrowth20psychrophilic
31783positivegrowth04-30
31783positiveoptimum20psychrophilic
67771positivegrowth20psychrophilic

culture pH

@refabilitytypepHPH range
31783positivegrowth05-09alkaliphile
31783positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31783aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
31783NaClpositivegrowth01-10 %
31783NaClpositiveoptimum06-07 %

observation

  • @ref: 31783
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3178317128adipate+carbon source
3178325115malate+carbon source
3178329864mannitol+carbon source

enzymes

@refvalueactivityec
31783catalase+1.11.1.6
31783cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7071seawaterEast SeaRepublic of KoreaKORAsia
67771From sea waterEast SeaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

Safety information

risk assessment

  • @ref: 7071
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
7071Sulfitobacter litoralis strain Iso 3 16S ribosomal RNA gene, partial sequenceDQ0975271400ena335975
67771Sulfitobacter litoralis strain Iso 3 16S ribosomal RNA, partial sequenceNR_0435471400nuccore335975

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfitobacter litoralis DSM 17584GCA_900103185contigncbi335975
66792Sulfitobacter litoralis strain DSM 17584335975.8wgspatric335975
66792Sulfitobacter litoralis DSM 175842622736527draftimg335975

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno97.786yes
anaerobicno98.04yes
halophileyes87.986yes
spore-formingno96.416no
glucose-utilyes77.415no
motileyes59.735yes
flagellatedno87.726no
thermophileno98.627yes
aerobicyes91.898yes
glucose-fermentno92.088no

External links

@ref: 7071

culture collection no.: DSM 17584, KCTC 12521, Iso 3

straininfo link

  • @ref: 82975
  • straininfo: 398873

literature

  • topic: Phylogeny
  • Pubmed-ID: 17392188
  • title: Sulfitobacter litoralis sp. nov., a marine bacterium isolated from the East Sea, Korea.
  • authors: Park JR, Bae JW, Nam YD, Chang HW, Kwon HY, Quan ZX, Park YH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64267-0
  • year: 2007
  • mesh: DNA, Bacterial, DNA, Ribosomal/genetics, Genes, Bacterial, Genes, rRNA, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics, Seawater/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
7071Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17584)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17584
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31783Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2805528776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
82975Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398873.1StrainInfo: A central database for resolving microbial strain identifiers